C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium voltage-gated channel, Shaw-related subfamily, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116396 KCNC4 9606 + 1:110211343-110283100 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369787 KCNC4-004 110211473-110249124 protein_coding
  ENST00000412512 KCNC4-007 110212148-110283100 processed_transcript
  ENST00000413138 KCNC4-006 110211492-110234039 protein_coding
  ENST00000438661 KCNC4-003 110211500-110234044 protein_coding
  ENST00000459877 KCNC4-002 110219716-110234044 retained_intron
  ENST00000469655 KCNC4-001 110211343-110234044 nonsense_mediated_decay
  ENST00000489935 KCNC4-005 110211343-110224083 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369787ENST00000413138ENST00000438661ENST00000459877ENST00000469655ENST00000489935
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369787 0.066±0.00 0.230±0.00 0.289±0.00 0.192±0.06 0.307±0.00 0.208±0.00 0.104±0.05 0.428±0.00 0.113±0.07 0.305±0.14 0.019±0.00 0.439±0.21 0.126±0.00 0.284±0.14
ENST00000413138 N/A N/A N/A 1.152±0.28 N/A N/A N/A N/A 0.131±0.00 N/A N/A 1.630±0.00 0.886±0.30 1.645±0.00
ENST00000438661 N/A N/A N/A 2.870±1.12 0.744±0.00 N/A 0.451±0.00 1.070±0.55 N/A 0.294±0.00 N/A 0.539±0.00 1.307±0.56 N/A
ENST00000459877 N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A 0.045±0.00 N/A N/A N/A
ENST00000469655 1.750±0.00 1.050±0.00 N/A 2.453±0.00 1.351±0.00 1.613±0.00 0.840±0.00 2.425±0.00 0.263±0.00 2.141±0.00 0.831±0.00 1.393±0.28 1.340±0.09 2.521±0.58
ENST00000489935 N/A N/A N/A N/A N/A N/A 0.592±0.00 N/A N/A 0.457±0.00 1.239±0.00 N/A 1.132±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U2 CIL_0006U2_0002 CGP 1:110150486-110283100

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005249 TAS voltage-gated potassium channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005267 TAS potassium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006813 TAS potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IEA membrane
GO:0031594 IEA neuromuscular junction
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043679 IEA axon terminus
GO:0046928 IEA regulation of neurotransmitter secretion
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061288 kcnc4 potassium voltage-gated channel, Shaw-related subfamily, member 4 protein_coding Danio_rerio
ENSMUSG00000027895 Kcnc4 potassium voltage gated channel, Shaw-related subfamily, member 4 protein_coding Mus_musculus

Loading