C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006U2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068787-ENSDARG00000061288 CGP 7955 8:25714204-25818251
GeneTranscriptPositionBiotype
ENSDARG00000061288 (kcnc4)
potassium voltage-gated channel, Shaw-related subfamily, member 4 		ENSDART00000087293 (kcnc4-201) 25779021-25818251 protein_coding
ENSDART00000146805 (kcnc4-001) 25791150-25818251 protein_coding
ENSDARG00000068787 (slc6a17)
solute carrier family 6, member 17 		ENSDART00000099607 (slc6a17-001) 25714207-25743935 protein_coding
ENSDART00000156570 (slc6a17-201) 25714204-25742287 protein_coding
ENSDARG00000095917 (si:dkey-71l10.3)
si:dkey-71l10.3 		ENSDART00000148813 (si:dkey-71l10.3-001) 25719928-25761886 antisense
CIL_0006U2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197106-ENSG00000116396 CGP 9606 1:110150486-110283100
GeneTranscriptPositionBiotype
ENSG00000116396 (KCNC4)
potassium voltage-gated channel, Shaw-related subfamily, member 4 		ENST00000369787 (KCNC4-004) 110211473-110249124 protein_coding
ENST00000412512 (KCNC4-007) 110212148-110283100 processed_transcript
ENST00000413138 (KCNC4-006) 110211492-110234039 protein_coding
ENST00000438661 (KCNC4-003) 110211500-110234044 protein_coding
ENST00000459877 (KCNC4-002) 110219716-110234044 retained_intron
ENST00000469655 (KCNC4-001) 110211343-110234044 nonsense_mediated_decay
ENST00000489935 (KCNC4-005) 110211343-110224083 retained_intron
ENSG00000197106 (SLC6A17)
solute carrier family 6 (neutral amino acid transporter), member 17 		ENST00000331565 (SLC6A17-001) 110150486-110202202 protein_coding
ENST00000465159 (SLC6A17-002) 110192568-110194988 processed_transcript
ENSG00000200536 (SNORA25)
Small nucleolar RNA SNORA25 		ENST00000363666 (SNORA25.1-204) 110272484-110272607 snoRNA
ENSG00000224965 (KCNC4-AS1)
KCNC4 antisense RNA 1 (head to head) 		ENST00000455967 (KCNC4-AS1-001) 110208834-110209987 antisense
ENSG00000227091 (RP5-1028L10.1)
 ENST00000418579 (RP5-1028L10.1-002) 110167081-110168220 antisense
ENST00000430098 (RP5-1028L10.1-001) 110166186-110167183 antisense
ENST00000443008 (RP5-1028L10.1-003) 110166807-110172489 antisense
ENSG00000235526 (RP5-1028L10.2)
 ENST00000440688 (RP5-1028L10.2-001) 110177643-110178719 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006U2_0001ENSDARG00000061288ENSDART00000087293ENSDART00000146805ENSDARG00000068787ENSDART00000099607ENSDART00000156570ENSDARG00000095917ENSDART00000148813CIL_0006U2_0002ENSG00000116396ENST00000369787ENST00000412512ENST00000413138ENST00000438661ENST00000459877ENST00000469655ENST00000489935ENSG00000197106ENST00000331565ENST00000465159ENSG00000200536ENST00000363666ENSG00000224965ENST00000455967ENSG00000227091ENST00000418579ENST00000430098ENST00000443008ENSG00000235526ENST00000440688
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006U2_0001ENSDARG00000061288ENSDART00000087293ENSDART00000146805ENSDARG00000068787ENSDART00000099607ENSDART00000156570ENSDARG00000095917ENSDART00000148813CIL_0006U2_0002ENSG00000116396ENST00000369787ENST00000413138ENST00000438661ENST00000459877ENST00000469655ENST00000489935ENSG00000197106ENST00000331565ENSG00000200536ENST00000363666ENSG00000224965ENST00000455967ENSG00000227091ENST00000418579ENST00000430098ENST00000443008ENSG00000235526ENST00000440688
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061288 ENSDART00000087293 N/A N/A N/A 2.824±1.69 N/A N/A 0.972±0.47 0.321±0.08 0.025±0.00 N/A 2.402±0.00 N/A N/A N/A
ENSDART00000146805 N/A N/A N/A N/A N/A N/A 0.743±0.00 0.089±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000068787 ENSDART00000099607 N/A N/A N/A N/A N/A N/A 0.047±0.03 0.087±0.01 0.037±0.00 N/A N/A N/A N/A N/A
ENSDART00000156570 N/A N/A N/A N/A N/A N/A 0.018±0.00 0.138±0.00 N/A N/A 0.464±0.00 N/A N/A N/A
ENSDARG00000095917 ENSDART00000148813 N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A 0.088±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116396 ENST00000369787 0.066±0.00 0.230±0.00 0.289±0.00 0.192±0.06 0.307±0.00 0.208±0.00 0.104±0.05 0.428±0.00 0.113±0.07 0.305±0.14 0.019±0.00 0.439±0.21 0.126±0.00 0.284±0.14
ENST00000412512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413138 N/A N/A N/A 1.152±0.28 N/A N/A N/A N/A 0.131±0.00 N/A N/A 1.630±0.00 0.886±0.30 1.645±0.00
ENST00000438661 N/A N/A N/A 2.870±1.12 0.744±0.00 N/A 0.451±0.00 1.070±0.55 N/A 0.294±0.00 N/A 0.539±0.00 1.307±0.56 N/A
ENST00000459877 N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A 0.045±0.00 N/A N/A N/A
ENST00000469655 1.750±0.00 1.050±0.00 N/A 2.453±0.00 1.351±0.00 1.613±0.00 0.840±0.00 2.425±0.00 0.263±0.00 2.141±0.00 0.831±0.00 1.393±0.28 1.340±0.09 2.521±0.58
ENST00000489935 N/A N/A N/A N/A N/A N/A 0.592±0.00 N/A N/A 0.457±0.00 1.239±0.00 N/A 1.132±0.00 N/A
ENSG00000197106 ENST00000331565 0.117±0.00 0.027±0.00 0.122±0.00 19.820±12.43 0.013±0.00 0.240±0.00 0.011±0.01 0.806±0.78 0.023±0.00 0.042±0.00 0.035±0.00 0.028±0.01 0.483±0.17 1.223±0.80
ENST00000465159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200536 ENST00000363666 N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000224965 ENST00000455967 0.024±0.00 0.151±0.00 N/A 0.219±0.00 0.052±0.00 0.047±0.00 N/A 0.155±0.00 0.023±0.00 0.171±0.00 N/A 0.276±0.16 0.130±0.10 1.485±0.06
ENSG00000227091 ENST00000418579 N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000430098 N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A N/A N/A N/A
ENST00000443008 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A
ENSG00000235526 ENST00000440688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00

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