C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shaw-related subfamily, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469655 KCNC4-001 ENSG00000116396 9606 + 1:110211343-110234044 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000469655
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000469655 1.750±0.00 1.050±0.00 2.453±0.00 1.351±0.00 1.613±0.00 0.840±0.00 2.425±0.00 0.263±0.00 2.141±0.00 0.831±0.00 1.393±0.28 1.340±0.09 2.521±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U2 CIL_0006U2_0002 CGP 1:110150486-110283100

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005249 TAS voltage-gated potassium channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005267 TAS potassium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006813 TAS potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009617 Kcnc4-201 protein_coding Mus_musculus 0 2233
ENSMUST00000160433 Kcnc1-002 protein_coding Mus_musculus 0 898
ENSMUST00000025202 Kcnc1-001 protein_coding Mus_musculus 0 898
ENSMUST00000107906 Kcnc3-002 protein_coding Mus_musculus 0 641
ENSMUST00000107907 Kcnc3-001 protein_coding Mus_musculus 0 641
ENSMUST00000107905 Kcnc3-004 protein_coding Mus_musculus 0 641
ENSMUST00000071062 Kcnc3-003 protein_coding Mus_musculus 0 641
ENSDART00000078249 kcnc3a-201 protein_coding Danio_rerio 0 573
ENSDART00000148662 kcnc3a-002 protein_coding Danio_rerio 0 573
ENSDART00000148861 kcnc3a-001 protein_coding Danio_rerio 0 573
ENSMUST00000055064 Kcna10-001 protein_coding Mus_musculus 0.000000000001 81

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