C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: complement factor H-related 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116785 CFHR3 9606 + 1:196774795-196795406 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367425 CFHR3-001 196774795-196794073 protein_coding
  ENST00000367427 CFHR3-003 196774813-196793488 nonsense_mediated_decay
  ENST00000391985 CFHR3-006 196774816-196793675 protein_coding
  ENST00000461558 CFHR3-004 196789760-196793633 retained_intron
  ENST00000471440 CFHR3-005 196774813-196790022 protein_coding
  ENST00000617219 CFHR3-201 196774816-196795406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367425ENST00000391985ENST00000461558ENST00000471440ENST00000617219
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367425 N/A 0.305±0.00 N/A 0.221±0.00 N/A N/A 28.805±28.50 N/A N/A N/A 0.053±0.00 0.030±0.00 N/A
ENST00000391985 0.229±0.00 N/A 0.086±0.00 0.311±0.00 0.108±0.00 0.229±0.00 N/A N/A 0.435±0.00 0.075±0.00 3.418±3.39 N/A 0.034±0.00
ENST00000461558 N/A N/A N/A 0.144±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471440 N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.027±0.01
ENST00000617219 0.072±0.00 0.441±0.00 0.035±0.00 N/A 0.127±0.00 0.032±0.01 39.401±0.00 28.162±0.00 0.047±0.00 N/A N/A N/A 0.028±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001M0 CIL_0001M0_0003 CGP 1:196651878-196795406
CIL_0001M0 CIL_0001M0_0005 CGP 1:196774795-196959210

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005615 TAS extracellular space
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091868 f13b coagulation factor XIII, B polypeptide protein_coding Danio_rerio
ENSDARG00000092786 cfhl5 complement factor H like 5 protein_coding Danio_rerio
ENSDARG00000094496 cfhl4 complement factor H like 4 protein_coding Danio_rerio
ENSMUSG00000026365 Cfh complement component factor h protein_coding Mus_musculus
ENSMUSG00000033898 Cfhr2 complement factor H-related 2 protein_coding Mus_musculus
ENSMUSG00000057037 Cfhr1 complement factor H-related 1 protein_coding Mus_musculus
ENSMUSG00000070594 Gm4788 predicted gene 4788 protein_coding Mus_musculus

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