C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription termination factor, RNA polymerase II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116830 TTF2 9606 + 1:117060303-117107453 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369466 TTF2-001 117060303-117107453 protein_coding
  ENST00000427271 TTF2-005 117096171-117102362 protein_coding
  ENST00000463696 TTF2-004 117095325-117101656 processed_transcript
  ENST00000469638 TTF2-007 117075295-117076389 processed_transcript
  ENST00000470935 TTF2-002 117060362-117075444 processed_transcript
  ENST00000480701 TTF2-006 117098246-117101700 processed_transcript
  ENST00000492682 TTF2-003 117092787-117101749 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369466ENST00000427271ENST00000469638ENST00000470935
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369466 0.320±0.00 0.913±0.00 0.090±0.00 0.089±0.00 0.903±0.00 0.253±0.00 0.490±0.00 0.552±0.46 0.233±0.13 0.157±0.10 0.118±0.08 0.648±0.20 0.387±0.00 0.717±0.26
ENST00000427271 1.432±0.00 N/A N/A N/A N/A N/A N/A N/A 0.880±0.00 N/A N/A N/A N/A N/A
ENST00000469638 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.312±0.00 1.110±0.00 N/A N/A N/A
ENST00000470935 N/A N/A 0.824±0.00 0.256±0.00 2.243±0.00 3.101±0.00 N/A N/A 1.486±0.00 N/A N/A 2.123±0.17 1.488±0.00 1.874±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006353 TAS DNA-templated transcription, termination
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 IEA mRNA processing
GO:0008023 TAS transcription elongation factor complex
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 TAS DNA-dependent ATPase activity
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086795 TTF2 transcription termination factor, RNA polymerase II protein_coding Danio_rerio
ENSMUSG00000033222 Ttf2 transcription termination factor, RNA polymerase II protein_coding Mus_musculus

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