C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription termination factor, RNA polymerase II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369466 TTF2-001 ENSG00000116830 9606 + 1:117060303-117107453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369466
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369466 0.320±0.00 0.913±0.00 0.090±0.00 0.089±0.00 0.903±0.00 0.253±0.00 0.490±0.00 0.552±0.46 0.233±0.13 0.157±0.10 0.118±0.08 0.648±0.20 0.387±0.00 0.717±0.26

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006353 TAS DNA-templated transcription, termination
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 IEA mRNA processing
GO:0008023 TAS transcription elongation factor complex
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 TAS DNA-dependent ATPase activity
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076941 Ttf2-001 protein_coding Mus_musculus 0 2078
ENSMUST00000127357 Ttf2-002 retained_intron Mus_musculus 0 1389
ENSMUST00000145811 Ttf2-004 retained_intron Mus_musculus 0 385
ENSMUST00000057844 B230219D22Rik-201 protein_coding Mus_musculus 0.00001 58

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