C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nidogen 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116962 NID1 9606 - 1:235975830-236065162 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264187 NID1-001 235975830-236065162 protein_coding
  ENST00000366595 NID1-002 235975830-236065109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264187ENST00000366595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264187 85.540±0.00 9.458±0.00 N/A 1.711±0.00 12.880±1.92 20.894±14.36 11.668±7.29 15.851±0.58 12.827±0.41 13.680±10.49 5.509±3.38 16.402±5.13 61.735±15.24 6.003±5.14
ENST00000366595 52.239±0.00 9.386±0.00 0.696±0.00 0.959±0.48 7.714±5.93 39.914±0.00 5.584±0.00 15.612±0.00 10.657±0.00 2.932±2.17 2.205±0.00 9.795±3.72 25.905±14.83 8.949±8.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L2 CIL_0000L2_0002 CGP 1:235975830-236221865

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IEA basal lamina
GO:0007160 IEA cell-matrix adhesion
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0032836 IEA glomerular basement membrane development
GO:0043236 IDA laminin binding
GO:0043237 IEA laminin-1 binding
GO:0043394 IPI proteoglycan binding
GO:0050840 IEA extracellular matrix binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071711 TAS basement membrane organization
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060675 NID1 (1 of 2) nidogen 1 protein_coding Danio_rerio
ENSDARG00000068710 nid1a nidogen 1a protein_coding Danio_rerio
ENSMUSG00000005397 Nid1 nidogen 1 protein_coding Mus_musculus

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