C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nidogen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264187 NID1-001 ENSG00000116962 9606 - 1:235975830-236065162 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264187
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264187 85.540±0.00 9.458±0.00 1.711±0.00 12.880±1.92 20.894±14.36 11.668±7.29 15.851±0.58 12.827±0.41 13.680±10.49 5.509±3.38 16.402±5.13 61.735±15.24 6.003±5.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L2 CIL_0000L2_0002 CGP 1:235975830-236221865

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IEA basal lamina
GO:0007160 IEA cell-matrix adhesion
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0032836 IEA glomerular basement membrane development
GO:0043236 IDA laminin binding
GO:0043237 IEA laminin-1 binding
GO:0043394 IPI proteoglycan binding
GO:0050840 IEA extracellular matrix binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071711 TAS basement membrane organization
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005532 Nid1-201 protein_coding Mus_musculus 0 3701

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