C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nidogen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366595 NID1-002 ENSG00000116962 9606 - 1:235975830-236065109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366595 52.239±0.00 9.386±0.00 0.696±0.00 0.959±0.48 7.714±5.93 39.914±0.00 5.584±0.00 15.612±0.00 10.657±0.00 2.932±2.17 2.205±0.00 9.795±3.72 25.905±14.83 8.949±8.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L2 CIL_0000L2_0002 CGP 1:235975830-236221865

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0007160 IEA cell-matrix adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0043236 IDA laminin binding
GO:0043394 IPI proteoglycan binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071711 TAS basement membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005532 Nid1-201 protein_coding Mus_musculus 0 2025

Loading