C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: guanylate binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117226 GBP3 9606 - 1:89006666-89022894 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000235878 GBP3-002 89007769-89022838 nonsense_mediated_decay
  ENST00000370481 GBP3-008 89006666-89022882 protein_coding
  ENST00000370482 GBP3-009 89006679-89022851 retained_intron
  ENST00000445969 GBP3-006 89008935-89013299 protein_coding
  ENST00000461384 GBP3-007 89008844-89011835 protein_coding
  ENST00000475853 GBP3-004 89015320-89022860 processed_transcript
  ENST00000489444 GBP3-005 89006680-89022778 nonsense_mediated_decay
  ENST00000493594 GBP3-003 89007270-89022894 nonsense_mediated_decay
  ENST00000564037 GBP3-011 89020300-89022751 retained_intron
  ENST00000564665 GBP3-010 89014102-89022866 protein_coding
  ENST00000568006 GBP3-012 89015343-89022803 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000235878ENST00000370481ENST00000370482ENST00000445969ENST00000461384ENST00000489444ENST00000493594ENST00000564037ENST00000564665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000235878 N/A N/A N/A N/A 0.764±0.00 N/A N/A N/A 1.513±0.00 3.521±0.00 0.100±0.01 0.731±0.11 N/A 0.569±0.00
ENST00000370481 0.418±0.00 1.007±0.00 0.635±0.00 N/A 2.952±0.00 1.882±0.80 0.313±0.03 N/A 0.949±0.35 12.616±0.00 N/A 3.588±1.41 2.016±0.27 0.172±0.00
ENST00000370482 N/A N/A N/A N/A 0.725±0.00 N/A 0.140±0.00 N/A 0.519±0.00 1.997±0.00 0.028±0.00 0.480±0.00 N/A N/A
ENST00000445969 1.643±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A
ENST00000461384 N/A N/A N/A 0.989±0.74 N/A N/A N/A 1.887±0.00 N/A N/A N/A 4.397±0.00 5.921±0.00 0.787±0.00
ENST00000489444 0.395±0.00 2.242±0.00 N/A 1.036±0.00 1.128±0.06 4.072±0.00 0.482±0.00 3.104±2.40 0.478±0.00 4.151±2.51 N/A 1.248±0.57 0.631±0.08 1.885±0.00
ENST00000493594 N/A N/A 1.148±0.00 N/A 0.880±0.00 N/A 0.325±0.00 0.359±0.00 1.305±0.00 N/A N/A 0.734±0.00 N/A N/A
ENST00000564037 N/A N/A N/A N/A N/A N/A N/A 2.003±0.00 N/A N/A N/A N/A N/A N/A
ENST00000564665 N/A N/A N/A N/A 3.417±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0003 CGP 1:89006666-89065360

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0016020 IEA membrane
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005627 CABZ01068209.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000034063 CABZ01068208.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000038668 gbp1 guanylate binding protein 1 protein_coding Danio_rerio
ENSDARG00000038669 gbp2 guanylate binding protein 2 protein_coding Danio_rerio
ENSDARG00000067663 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio
ENSDARG00000068857 gbp4 guanylate binding protein 4 protein_coding Danio_rerio
ENSDARG00000074988 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio

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