C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: patched 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117425 PTCH2 9606 - 1:44819844-44843063 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372192 PTCH2-001 44821933-44843063 protein_coding
  ENST00000438067 PTCH2-002 44819844-44823260 protein_coding
  ENST00000447098 PTCH2-201 44819844-44842944 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372192ENST00000447098
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372192 0.184±0.00 1.848±0.00 0.092±0.00 0.353±0.12 1.498±0.00 0.323±0.00 0.059±0.03 0.132±0.13 0.122±0.06 0.201±0.00 0.153±0.14 16.417±12.91 0.025±0.01 9.697±6.03
ENST00000447098 N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A 0.009±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477
CIL_000637 CIL_000637_0002 CGP 1:44819844-44986722

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005119 IPI smoothened binding
GO:0007165 IEA signal transduction
GO:0008158 TAS:IEA hedgehog receptor activity
GO:0008544 IEA epidermis development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042633 IEA hair cycle
GO:0043588 IEA skin development
GO:0045879 TAS negative regulation of smoothened signaling pathway
GO:0097108 TAS hedgehog family protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055026 ptch2 patched 2 protein_coding Danio_rerio
ENSMUSG00000028681 Ptch2 patched homolog 2 protein_coding Mus_musculus

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