C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patched 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372192 PTCH2-001 ENSG00000117425 9606 - 1:44821933-44843063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372192 0.184±0.00 1.848±0.00 0.092±0.00 0.353±0.12 1.498±0.00 0.323±0.00 0.059±0.03 0.132±0.13 0.122±0.06 0.201±0.00 0.153±0.14 16.417±12.91 0.025±0.01 9.697±6.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477
CIL_000637 CIL_000637_0002 CGP 1:44819844-44986722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005119 IPI smoothened binding
GO:0007165 IEA signal transduction
GO:0008158 TAS:IEA hedgehog receptor activity
GO:0008544 IEA epidermis development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042633 IEA hair cycle
GO:0043588 IEA skin development
GO:0045879 TAS negative regulation of smoothened signaling pathway
GO:0097108 TAS hedgehog family protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030443 Ptch2-001 protein_coding Mus_musculus 0 4405
ENSMUST00000144620 Ptch2-002 nonsense_mediated_decay Mus_musculus 0 4372
ENSMUST00000137209 Ptch2-005 nonsense_mediated_decay Mus_musculus 0 806
ENSMUST00000135133 Ptch2-006 retained_intron Mus_musculus 0 562
ENSMUST00000123226 Ptch2-003 retained_intron Mus_musculus 0 459

Loading