C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: patched homolog 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028681 Ptch2 10090 + 4:117096075-117116101 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030443 Ptch2-001 117096075-117115383 protein_coding
  ENSMUST00000123226 Ptch2-003 117113424-117116101 retained_intron
  ENSMUST00000135133 Ptch2-006 117110235-117111088 retained_intron
  ENSMUST00000137209 Ptch2-005 117105238-117108514 nonsense_mediated_decay
  ENSMUST00000144620 Ptch2-002 117096096-117115383 nonsense_mediated_decay
  ENSMUST00000156989 Ptch2-004 117104920-117106313 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030443ENSMUST00000123226ENSMUST00000135133ENSMUST00000137209ENSMUST00000144620ENSMUST00000156989
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030443 8.366±2.08 4.922±0.68 0.748±0.13 2.835±0.58 4.924±1.78 1.145±0.28 0.633±0.13 1.391±0.43 0.362±0.12 1.666±0.46 0.172±0.03 5.119±2.37 0.309±0.14 4.556±2.10
ENSMUST00000123226 N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A 0.238±0.00 N/A 0.099±0.04 0.437±0.08 0.090±0.02 N/A
ENSMUST00000135133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A
ENSMUST00000137209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A
ENSMUST00000144620 N/A N/A 0.191±0.00 0.421±0.26 N/A N/A 0.118±0.00 0.376±0.12 0.094±0.01 N/A 0.246±0.10 N/A 0.023±0.00 2.435±0.22
ENSMUST00000156989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005119 IEA smoothened binding
GO:0007165 IEA signal transduction
GO:0008158 IEA hedgehog receptor activity
GO:0008544 IMP epidermis development
GO:0016021 IEA integral component of membrane
GO:0042633 IMP hair cycle
GO:0043588 IMP skin development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055026 ptch2 patched 2 protein_coding Danio_rerio
ENSG00000117425 PTCH2 patched 2 protein_coding Homo_sapiens

Loading