C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117758 STX12 9606 + 1:27773183-27824452 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373943 STX12-001 27773183-27824452 protein_coding
  ENST00000440806 STX12-002 27773235-27812268 protein_coding
  ENST00000468761 STX12-003 27773255-27802039 processed_transcript
  ENST00000472285 STX12-005 27810247-27818074 processed_transcript
  ENST00000481874 STX12-004 27809923-27812234 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373943ENST00000472285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373943 25.299±0.00 15.324±0.00 3.451±0.00 20.244±8.76 13.057±7.12 10.934±4.29 4.682±2.52 5.438±1.75 7.540±2.79 10.089±0.55 1.012±0.23 10.473±2.80 15.145±1.77 11.402±2.15
ENST00000472285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.604±0.00 31.607±0.00 17.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IBA SNARE binding
GO:0005484 IBA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0006886 IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016079 IBA synaptic vesicle exocytosis
GO:0016192 IEA vesicle-mediated transport
GO:0031083 IDA BLOC-1 complex
GO:0031201 IDA SNARE complex
GO:0033344 IDA cholesterol efflux
GO:0045121 IDA membrane raft
GO:0045335 IDA phagocytic vesicle
GO:0050821 IDA protein stabilization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010290 stx12 syntaxin 12 protein_coding Danio_rerio
ENSDARG00000044605 stx12l syntaxin 12, like protein_coding Danio_rerio
ENSMUSG00000028879 Stx12 syntaxin 12 protein_coding Mus_musculus

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