C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373943 STX12-001 ENSG00000117758 9606 + 1:27773183-27824452 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373943 25.299±0.00 15.324±0.00 3.451±0.00 20.244±8.76 13.057±7.12 10.934±4.29 4.682±2.52 5.438±1.75 7.540±2.79 10.089±0.55 1.012±0.23 10.473±2.80 15.145±1.77 11.402±2.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IBA SNARE binding
GO:0005484 IBA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0006886 IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016079 IBA synaptic vesicle exocytosis
GO:0016192 IEA vesicle-mediated transport
GO:0031083 IDA BLOC-1 complex
GO:0031201 IDA SNARE complex
GO:0033344 IDA cholesterol efflux
GO:0045121 IDA membrane raft
GO:0045335 IDA phagocytic vesicle
GO:0050821 IDA protein stabilization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030698 Stx12-001 protein_coding Mus_musculus 0 1825
ENSMUST00000137109 Stx12-002 processed_transcript Mus_musculus 0 544

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