C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphoid-restricted membrane protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118308 LRMP 9606 + 12:25021002-25108334 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354454 LRMP-003 25052512-25108235 protein_coding
  ENST00000361433 LRMP-001 25052272-25108308 nonsense_mediated_decay
  ENST00000536173 LRMP-008 25052587-25108334 protein_coding
  ENST00000547044 LRMP-005 25052740-25108248 protein_coding
  ENST00000548766 LRMP-002 25052642-25108205 protein_coding
  ENST00000549437 LRMP-004 25052740-25108248 retained_intron
  ENST00000550945 LRMP-006 25052271-25088140 protein_coding
  ENST00000553398 LRMP-017 25096958-25102778 retained_intron
  ENST00000554272 LRMP-013 25052945-25089677 nonsense_mediated_decay
  ENST00000554942 LRMP-012 25052700-25079749 protein_coding
  ENST00000555141 LRMP-010 25052255-25066409 processed_transcript
  ENST00000555165 LRMP-014 25035480-25038018 processed_transcript
  ENST00000555194 LRMP-020 25104329-25107933 retained_intron
  ENST00000555877 LRMP-018 25096933-25107989 nonsense_mediated_decay
  ENST00000555885 LRMP-019 25089774-25091120 protein_coding
  ENST00000556485 LRMP-009 25033759-25066503 processed_transcript
  ENST00000556887 LRMP-011 25052665-25069431 protein_coding
  ENST00000557270 LRMP-015 25021002-25036686 processed_transcript
  ENST00000557472 LRMP-016 25075740-25090147 processed_transcript
  ENST00000557489 LRMP-007 25052512-25088146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354454ENST00000361433ENST00000536173ENST00000547044ENST00000548766ENST00000549437ENST00000550945ENST00000553398ENST00000555141ENST00000555877ENST00000555885ENST00000556887ENST00000557472ENST00000557489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354454 N/A N/A N/A 1.061±0.00 0.478±0.00 N/A 0.146±0.00 0.585±0.00 0.102±0.00 1.641±0.00 N/A 0.438±0.06 0.530±0.00 0.435±0.00
ENST00000361433 N/A N/A N/A N/A N/A 0.252±0.00 0.089±0.00 0.452±0.00 N/A N/A N/A N/A N/A N/A
ENST00000536173 N/A 3.464±0.00 N/A 0.731±0.30 0.805±0.33 1.382±0.81 0.066±0.00 0.598±0.00 N/A N/A N/A 0.406±0.20 0.610±0.00 1.127±0.00
ENST00000547044 0.790±0.00 3.840±0.00 0.553±0.00 0.507±0.00 1.818±0.00 N/A 0.296±0.00 N/A 0.298±0.00 N/A N/A 0.282±0.01 0.331±0.12 N/A
ENST00000548766 0.950±0.00 N/A N/A N/A N/A N/A N/A 0.680±0.00 N/A N/A N/A 0.243±0.00 0.268±0.00 0.195±0.00
ENST00000549437 N/A N/A N/A N/A N/A N/A N/A N/A 0.248±0.15 N/A N/A 0.228±0.00 0.251±0.00 0.274±0.00
ENST00000550945 N/A N/A N/A N/A N/A N/A 0.283±0.00 N/A N/A 0.759±0.00 N/A 0.385±0.00 N/A N/A
ENST00000553398 N/A N/A N/A N/A N/A N/A N/A N/A 1.779±0.00 N/A N/A N/A N/A N/A
ENST00000555141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A
ENST00000555877 N/A N/A N/A N/A 1.652±0.00 N/A N/A N/A N/A N/A 0.112±0.00 1.152±0.00 1.758±0.00 0.352±0.00
ENST00000555885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A
ENST00000556887 N/A N/A N/A N/A 1.338±0.00 N/A N/A N/A N/A N/A N/A 0.817±0.00 N/A N/A
ENST00000557472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.211±0.00 N/A
ENST00000557489 N/A N/A N/A 0.814±0.00 N/A 2.585±0.00 N/A 0.461±0.00 1.264±0.00 1.558±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XB CIL_0008XB_0001 VISTA 12:24459866-25061247
CIL_0004XC CIL_0004XC_0001 CGP 12:25021002-25195162

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002376 IEA immune system process
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005783 IEA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005856 IEA cytoskeleton
GO:0005887 TAS integral component of plasma membrane
GO:0006903 TAS vesicle targeting
GO:0006906 TAS vesicle fusion
GO:0007338 IEA single fertilization
GO:0016020 IDA membrane
GO:0016021 TAS integral component of membrane
GO:0030176 IEA integral component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045574 lrmp lymphoid-restricted membrane protein protein_coding Danio_rerio
ENSMUSG00000030263 Lrmp lymphoid-restricted membrane protein protein_coding Mus_musculus

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