C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphoid-restricted membrane protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030263 Lrmp 10090 + 6:145115653-145174934 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032396 Lrmp-001 145121739-145174934 protein_coding
  ENSMUST00000125029 Lrmp-007 145145474-145158660 retained_intron
  ENSMUST00000132937 Lrmp-009 145157747-145171704 processed_transcript
  ENSMUST00000132948 Lrmp-004 145145477-145174928 protein_coding
  ENSMUST00000135191 Lrmp-010 145169505-145171989 retained_intron
  ENSMUST00000135984 Lrmp-003 145115653-145174928 nonsense_mediated_decay
  ENSMUST00000143631 Lrmp-002 145121781-145160968 retained_intron
  ENSMUST00000149244 Lrmp-005 145121742-145168684 retained_intron
  ENSMUST00000152571 Lrmp-006 145137497-145160415 protein_coding
  ENSMUST00000156849 Lrmp-008 145145474-145160981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000032396ENSMUST00000132937ENSMUST00000132948ENSMUST00000135984ENSMUST00000143631ENSMUST00000149244ENSMUST00000152571
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000032396 1.993±0.36 1.550±0.36 1.310±0.30 0.262±0.13 10.539±3.16 N/A 1.280±0.13 0.887±0.43 3.457±3.19 2.710±0.58 0.220±0.21 1.546±0.48 0.391±0.04
ENSMUST00000132937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.927±0.00
ENSMUST00000132948 N/A 1.279±0.20 1.152±0.06 0.150±0.00 11.284±5.52 14.047±2.31 N/A N/A 3.903±1.35 3.174±0.54 0.439±0.59 2.484±0.58 0.424±0.08
ENSMUST00000135984 0.785±0.00 0.954±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 4.550±0.00 0.534±0.16
ENSMUST00000143631 1.884±0.00 N/A N/A N/A 6.208±1.77 N/A N/A 0.523±0.16 4.030±1.01 2.378±0.22 0.116±0.00 1.551±0.00 0.525±0.00
ENSMUST00000149244 N/A N/A N/A N/A N/A 2.365±0.00 N/A N/A 0.307±0.14 N/A 0.198±0.19 1.625±0.00 0.180±0.00
ENSMUST00000152571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 N/A 1.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XB CIL_0008XB_0002 VISTA 6:144644642-145246014
CIL_0004XC CIL_0004XC_0002 CGP 6:145115653-145210970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0030176 IDA integral component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045574 lrmp lymphoid-restricted membrane protein protein_coding Danio_rerio
ENSG00000118308 LRMP lymphoid-restricted membrane protein protein_coding Homo_sapiens

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