C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004XC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118308-ENSG00000118307 CGP 9606 12:25021002-25195162
GeneTranscriptPositionBiotype
ENSG00000118307 (CASC1)
cancer susceptibility candidate 1 		ENST00000320267 (CASC1-001) 25108420-25195160 protein_coding
ENST00000354189 (CASC1-004) 25108420-25195098 protein_coding
ENST00000395987 (CASC1-003) 25108420-25195144 protein_coding
ENST00000395990 (CASC1-002) 25108420-25195160 protein_coding
ENST00000545133 (CASC1-009) 25108424-25195126 protein_coding
ENST00000554347 (CASC1-013) 25154341-25195130 protein_coding
ENST00000554533 (CASC1-005) 25108421-25195162 nonsense_mediated_decay
ENST00000555240 (CASC1-007) 25154375-25195127 retained_intron
ENST00000555554 (CASC1-014) 25111817-25149692 processed_transcript
ENST00000556006 (CASC1-010) 25108420-25158563 protein_coding
ENST00000556467 (CASC1-011) 25149762-25195160 nonsense_mediated_decay
ENST00000556547 (CASC1-012) 25149628-25195157 retained_intron
ENST00000557684 (CASC1-008) 25114657-25195126 processed_transcript
ENSG00000118308 (LRMP)
lymphoid-restricted membrane protein 		ENST00000354454 (LRMP-003) 25052512-25108235 protein_coding
ENST00000361433 (LRMP-001) 25052272-25108308 nonsense_mediated_decay
ENST00000536173 (LRMP-008) 25052587-25108334 protein_coding
ENST00000547044 (LRMP-005) 25052740-25108248 protein_coding
ENST00000548766 (LRMP-002) 25052642-25108205 protein_coding
ENST00000549437 (LRMP-004) 25052740-25108248 retained_intron
ENST00000550945 (LRMP-006) 25052271-25088140 protein_coding
ENST00000553398 (LRMP-017) 25096958-25102778 retained_intron
ENST00000554272 (LRMP-013) 25052945-25089677 nonsense_mediated_decay
ENST00000554942 (LRMP-012) 25052700-25079749 protein_coding
ENST00000555141 (LRMP-010) 25052255-25066409 processed_transcript
ENST00000555165 (LRMP-014) 25035480-25038018 processed_transcript
ENST00000555194 (LRMP-020) 25104329-25107933 retained_intron
ENST00000555877 (LRMP-018) 25096933-25107989 nonsense_mediated_decay
ENST00000555885 (LRMP-019) 25089774-25091120 protein_coding
ENST00000556485 (LRMP-009) 25033759-25066503 processed_transcript
ENST00000556887 (LRMP-011) 25052665-25069431 protein_coding
ENST00000557270 (LRMP-015) 25021002-25036686 processed_transcript
ENST00000557472 (LRMP-016) 25075740-25090147 processed_transcript
ENST00000557489 (LRMP-007) 25052512-25088146 protein_coding
ENSG00000258449 (RP11-713N11.4)
 ENST00000555862 (RP11-713N11.4-001) 25096868-25100980 antisense
ENSG00000258546 (CENPUP2)
centromere protein U pseudogene 2 		ENST00000555897 (CENPUP2-001) 25092715-25093900 processed_pseudogene
ENSG00000276842 (RP11-713N11.6)
 ENST00000622162 (RP11-713N11.6-001) 25103124-25103869 antisense
CIL_0004XC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030263-ENSMUSG00000043541 CGP 10090 6:145115653-145210970
GeneTranscriptPositionBiotype
ENSMUSG00000030263 (Lrmp)
lymphoid-restricted membrane protein 		ENSMUST00000032396 (Lrmp-001) 145121739-145174934 protein_coding
ENSMUST00000125029 (Lrmp-007) 145145474-145158660 retained_intron
ENSMUST00000132937 (Lrmp-009) 145157747-145171704 processed_transcript
ENSMUST00000132948 (Lrmp-004) 145145477-145174928 protein_coding
ENSMUST00000135191 (Lrmp-010) 145169505-145171989 retained_intron
ENSMUST00000135984 (Lrmp-003) 145115653-145174928 nonsense_mediated_decay
ENSMUST00000143631 (Lrmp-002) 145121781-145160968 retained_intron
ENSMUST00000149244 (Lrmp-005) 145121742-145168684 retained_intron
ENSMUST00000152571 (Lrmp-006) 145137497-145160415 protein_coding
ENSMUST00000156849 (Lrmp-008) 145145474-145160981 protein_coding
ENSMUSG00000043541 (Casc1)
cancer susceptibility candidate 1 		ENSMUST00000060797 (Casc1-001) 145174834-145210970 protein_coding
ENSMUST00000111727 (Casc1-003) 145174834-145205347 retained_intron
ENSMUST00000111728 (Casc1-005) 145174834-145210791 protein_coding
ENSMUST00000128070 (Casc1-006) 145202894-145210879 retained_intron
ENSMUST00000133671 (Casc1-004) 145192892-145210869 processed_transcript
ENSMUST00000152138 (Casc1-002) 145190268-145210899 retained_intron
ENSMUSG00000086863 (Gm15543)
predicted gene 15543 		ENSMUST00000141307 (Gm15543-001) 145182275-145187630 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XC_0001ENSG00000118307ENST00000320267ENST00000395987ENST00000545133ENST00000554347ENST00000554533ENST00000555240ENST00000555554ENST00000556006ENST00000556547ENST00000557684ENSG00000118308ENST00000354454ENST00000361433ENST00000536173ENST00000547044ENST00000548766ENST00000549437ENST00000550945ENST00000553398ENST00000555141ENST00000555877ENST00000555885ENST00000556887ENST00000557472ENST00000557489ENSG00000258449ENST00000555862ENSG00000258546ENST00000555897ENSG00000276842ENST00000622162CIL_0004XC_0002ENSMUSG00000030263ENSMUST00000032396ENSMUST00000132937ENSMUST00000132948ENSMUST00000135984ENSMUST00000143631ENSMUST00000149244ENSMUST00000152571ENSMUSG00000043541ENSMUST00000060797ENSMUST00000111727ENSMUST00000111728ENSMUST00000152138ENSMUSG00000086863ENSMUST00000141307
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118307 ENST00000320267 N/A N/A 0.475±0.00 0.479±0.00 N/A N/A N/A N/A N/A N/A N/A 0.499±0.60 0.015±0.00 1.954±0.00
ENST00000354189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395987 N/A N/A N/A 0.448±0.07 N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A 0.024±0.00 9.795±4.41
ENST00000395990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545133 N/A N/A N/A N/A N/A 0.015±0.00 0.044±0.00 N/A 0.175±0.00 N/A N/A N/A N/A 4.214±0.00
ENST00000554347 N/A N/A N/A N/A N/A N/A 0.094±0.01 N/A 0.623±0.00 N/A N/A N/A 0.047±0.00 N/A
ENST00000554533 N/A N/A N/A 0.220±0.00 N/A N/A 0.028±0.00 0.216±0.00 N/A 1.016±0.00 N/A N/A N/A N/A
ENST00000555240 N/A N/A 0.747±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555554 N/A N/A N/A N/A N/A 0.297±0.19 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556006 N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A 1.426±0.00 N/A N/A 0.023±0.00 N/A
ENST00000556467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556547 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A 0.100±0.00 N/A N/A
ENST00000557684 N/A N/A 0.188±0.00 0.314±0.00 0.204±0.00 N/A N/A N/A N/A 1.059±0.00 N/A 0.082±0.01 N/A 6.278±0.00
ENSG00000118308 ENST00000354454 N/A N/A N/A 1.061±0.00 0.478±0.00 N/A 0.146±0.00 0.585±0.00 0.102±0.00 1.641±0.00 N/A 0.438±0.06 0.530±0.00 0.435±0.00
ENST00000361433 N/A N/A N/A N/A N/A 0.252±0.00 0.089±0.00 0.452±0.00 N/A N/A N/A N/A N/A N/A
ENST00000536173 N/A 3.464±0.00 N/A 0.731±0.30 0.805±0.33 1.382±0.81 0.066±0.00 0.598±0.00 N/A N/A N/A 0.406±0.20 0.610±0.00 1.127±0.00
ENST00000547044 0.790±0.00 3.840±0.00 0.553±0.00 0.507±0.00 1.818±0.00 N/A 0.296±0.00 N/A 0.298±0.00 N/A N/A 0.282±0.01 0.331±0.12 N/A
ENST00000548766 0.950±0.00 N/A N/A N/A N/A N/A N/A 0.680±0.00 N/A N/A N/A 0.243±0.00 0.268±0.00 0.195±0.00
ENST00000549437 N/A N/A N/A N/A N/A N/A N/A N/A 0.248±0.15 N/A N/A 0.228±0.00 0.251±0.00 0.274±0.00
ENST00000550945 N/A N/A N/A N/A N/A N/A 0.283±0.00 N/A N/A 0.759±0.00 N/A 0.385±0.00 N/A N/A
ENST00000553398 N/A N/A N/A N/A N/A N/A N/A N/A 1.779±0.00 N/A N/A N/A N/A N/A
ENST00000554272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A
ENST00000555165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555877 N/A N/A N/A N/A 1.652±0.00 N/A N/A N/A N/A N/A 0.112±0.00 1.152±0.00 1.758±0.00 0.352±0.00
ENST00000555885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A
ENST00000556485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556887 N/A N/A N/A N/A 1.338±0.00 N/A N/A N/A N/A N/A N/A 0.817±0.00 N/A N/A
ENST00000557270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.211±0.00 N/A
ENST00000557489 N/A N/A N/A 0.814±0.00 N/A 2.585±0.00 N/A 0.461±0.00 1.264±0.00 1.558±0.00 N/A N/A N/A N/A
ENSG00000258449 ENST00000555862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.886±0.00
ENSG00000258546 ENST00000555897 0.017±0.00 0.043±0.00 0.075±0.00 0.041±0.00 0.106±0.00 0.331±0.00 0.020±0.00 N/A 0.144±0.13 0.048±0.02 N/A 0.053±0.04 N/A 0.021±0.00
ENSG00000276842 ENST00000622162 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.395±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030263 ENSMUST00000032396 1.993±0.36 1.550±0.36 1.310±0.30 0.262±0.13 10.539±3.16 N/A 1.280±0.13 0.887±0.43 3.457±3.19 2.710±0.58 0.220±0.21 1.546±0.48 0.391±0.04 N/A
ENSMUST00000125029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.927±0.00 N/A
ENSMUST00000132948 N/A 1.279±0.20 1.152±0.06 0.150±0.00 11.284±5.52 14.047±2.31 N/A N/A 3.903±1.35 3.174±0.54 0.439±0.59 2.484±0.58 0.424±0.08 N/A
ENSMUST00000135191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135984 0.785±0.00 0.954±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 4.550±0.00 0.534±0.16 N/A
ENSMUST00000143631 1.884±0.00 N/A N/A N/A 6.208±1.77 N/A N/A 0.523±0.16 4.030±1.01 2.378±0.22 0.116±0.00 1.551±0.00 0.525±0.00 N/A
ENSMUST00000149244 N/A N/A N/A N/A N/A 2.365±0.00 N/A N/A 0.307±0.14 N/A 0.198±0.19 1.625±0.00 0.180±0.00 N/A
ENSMUST00000152571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 N/A 1.027±0.00 N/A
ENSMUST00000156849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000043541 ENSMUST00000060797 N/A N/A N/A 0.320±0.00 N/A N/A N/A N/A N/A N/A 0.078±0.00 1.830±0.28 N/A 14.138±10.22
ENSMUST00000111727 N/A N/A N/A 0.194±0.01 N/A N/A N/A 0.188±0.00 0.055±0.00 1.544±0.41 0.036±0.01 1.729±0.77 0.189±0.04 2.201±0.27
ENSMUST00000111728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.359±0.00
ENSMUST00000128070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.02 1.596±0.31 N/A N/A
ENSMUSG00000086863 ENSMUST00000141307 N/A N/A N/A N/A 0.403±0.17 N/A 140.542±25.26 0.229±0.08 0.100±0.04 2.519±0.62 10.201±2.33 27.103±27.88 0.128±0.11 5.160±1.52

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