C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubinuclein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118900 UBN1 9606 + 16:4846665-4882360 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262376 UBN1-001 4847631-4882360 protein_coding
  ENST00000396658 UBN1-002 4852215-4882360 protein_coding
  ENST00000585857 UBN1-007 4860745-4870572 processed_transcript
  ENST00000586152 UBN1-009 4876948-4877813 retained_intron
  ENST00000586716 UBN1-006 4870888-4874968 protein_coding
  ENST00000587027 UBN1-005 4858574-4868903 nonsense_mediated_decay
  ENST00000589191 UBN1-008 4875272-4880445 nonsense_mediated_decay
  ENST00000590769 UBN1-004 4848380-4880294 protein_coding
  ENST00000592120 UBN1-003 4846665-4859129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262376ENST00000396658ENST00000590769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262376 11.447±0.00 5.566±0.00 N/A 3.207±1.56 4.228±1.13 5.262±1.17 6.132±4.52 3.367±0.00 3.549±1.73 4.473±0.00 4.246±2.51 8.448±4.77 7.414±2.30 38.222±20.40
ENST00000396658 N/A N/A 1.186±0.00 N/A N/A N/A N/A N/A 0.943±0.00 2.682±0.00 N/A N/A N/A N/A
ENST00000590769 N/A N/A N/A N/A N/A N/A N/A 1.811±0.00 N/A N/A N/A 1.559±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001G7 CIL_0001G7_0001 CGP 16:4796968-4847342
CIL_00004T CIL_00004T_0001 CGP 16:4803203-4882360
CIL_0001FC CIL_0001FC_0001 CGP 16:4846665-4960741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005923 ISS tight junction
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0010923 IDA negative regulation of phosphatase activity
GO:0016032 IEA viral process
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063169 UBN1 ubinuclein 1 protein_coding Danio_rerio
ENSMUSG00000039473 Ubn1 ubinuclein 1 protein_coding Mus_musculus

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