C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIIC, polypeptide 3, 102kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119041 GTF3C3 9606 - 2:196763032-196799725 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263956 GTF3C3-001 196763032-196799701 protein_coding
  ENST00000409364 GTF3C3-004 196780089-196799659 protein_coding
  ENST00000416690 GTF3C3-006 196773007-196776445 protein_coding
  ENST00000435252 GTF3C3-003 196774989-196776588 protein_coding
  ENST00000448087 GTF3C3-002 196777639-196785536 protein_coding
  ENST00000448539 GTF3C3-008 196792955-196799725 nonsense_mediated_decay
  ENST00000451088 GTF3C3-012 196792951-196799628 nonsense_mediated_decay
  ENST00000455546 GTF3C3-010 196790033-196799515 nonsense_mediated_decay
  ENST00000466862 GTF3C3-007 196778964-196780901 retained_intron
  ENST00000470386 GTF3C3-011 196785444-196791897 processed_transcript
  ENST00000481098 GTF3C3-005 196764579-196767004 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263956ENST00000409364ENST00000448087ENST00000448539ENST00000470386
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263956 4.102±0.00 N/A 2.686±0.99 2.191±0.53 3.218±0.00 1.920±1.41 1.214±0.00 1.494±0.39 1.925±0.31 3.564±2.30 4.278±2.94 3.322±0.37 4.802±2.54
ENST00000409364 N/A 0.737±0.00 N/A 1.434±0.00 N/A 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000448087 N/A N/A N/A 2.789±0.00 N/A N/A N/A N/A 2.189±0.00 N/A N/A N/A N/A
ENST00000448539 N/A N/A N/A N/A N/A 2.357±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000470386 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.050±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KC CIL_0002KC_0001 CGP 2:196194370-196763490
CIL_0002KF CIL_0002KF_0001 CGP 2:196639554-196799725

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IC DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IC transcription, DNA-templated
GO:0006383 IC transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043247 gtf3c3 general transcription factor IIIC, polypeptide 3 protein_coding Danio_rerio
ENSMUSG00000041303 Gtf3c3 general transcription factor IIIC, polypeptide 3 protein_coding Mus_musculus

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