C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002KC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138411-ENSG00000144395 CGP 9606 2:196194370-196763490
GeneTranscriptPositionBiotype
ENSG00000119041 (GTF3C3)
general transcription factor IIIC, polypeptide 3, 102kDa 		ENST00000263956 (GTF3C3-001) 196763032-196799701 protein_coding
ENST00000409364 (GTF3C3-004) 196780089-196799659 protein_coding
ENST00000416690 (GTF3C3-006) 196773007-196776445 protein_coding
ENST00000435252 (GTF3C3-003) 196774989-196776588 protein_coding
ENST00000448087 (GTF3C3-002) 196777639-196785536 protein_coding
ENST00000448539 (GTF3C3-008) 196792955-196799725 nonsense_mediated_decay
ENST00000451088 (GTF3C3-012) 196792951-196799628 nonsense_mediated_decay
ENST00000455546 (GTF3C3-010) 196790033-196799515 nonsense_mediated_decay
ENST00000466862 (GTF3C3-007) 196778964-196780901 retained_intron
ENST00000470386 (GTF3C3-011) 196785444-196791897 processed_transcript
ENST00000481098 (GTF3C3-005) 196764579-196767004 retained_intron
ENSG00000138411 (HECW2)
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 		ENST00000260983 (HECW2-001) 196194370-196592611 protein_coding
ENST00000409111 (HECW2-002) 196199251-196362222 protein_coding
ENST00000427457 (HECW2-004) 196343703-196593554 protein_coding
ENST00000452031 (HECW2-003) 196343657-196593692 protein_coding
ENST00000462290 (HECW2-006) 196257736-196278679 retained_intron
ENST00000498146 (HECW2-005) 196240460-196242255 retained_intron
ENSG00000144395 (CCDC150)
coiled-coil domain containing 150 		ENST00000389175 (CCDC150-001) 196639632-196732806 protein_coding
ENST00000409270 (CCDC150-006) 196713117-196732798 protein_coding
ENST00000424427 (CCDC150-005) 196713099-196732792 nonsense_mediated_decay
ENST00000431807 (CCDC150-020) 196639554-196732800 nonsense_mediated_decay
ENST00000448409 (CCDC150-008) 196713146-196732793 nonsense_mediated_decay
ENST00000460114 (CCDC150-014) 196701109-196712711 processed_transcript
ENST00000461243 (CCDC150-019) 196730863-196763490 processed_transcript
ENST00000461825 (CCDC150-011) 196718305-196719776 processed_transcript
ENST00000463826 (CCDC150-007) 196719279-196728011 retained_intron
ENST00000465092 (CCDC150-012) 196718574-196721626 processed_transcript
ENST00000469429 (CCDC150-013) 196677306-196719597 processed_transcript
ENST00000471033 (CCDC150-003) 196639715-196657429 retained_intron
ENST00000471546 (CCDC150-002) 196639632-196667934 retained_intron
ENST00000483877 (CCDC150-018) 196732097-196732751 processed_transcript
ENST00000487663 (CCDC150-009) 196719291-196729817 processed_transcript
ENST00000494389 (CCDC150-010) 196695043-196729528 processed_transcript
ENST00000495513 (CCDC150-016) 196656745-196676250 processed_transcript
ENST00000497159 (CCDC150-015) 196676169-196695070 processed_transcript
ENST00000498512 (CCDC150-017) 196639715-196676268 processed_transcript
ENSG00000229056 (AC020571.3)
 ENST00000430904 (AC020571.3-002) 196260024-196263559 antisense
ENST00000433933 (AC020571.3-001) 196260114-196264204 antisense
ENST00000605907 (AC020571.3-003) 196260433-196263629 antisense
ENSG00000276200 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000616437 (Metazoa_SRP.1-360) 196289409-196289707 misc_RNA
CIL_0002KC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042807-ENSMUSG00000025983 CGP 10090 1:53806876-54368727
GeneTranscriptPositionBiotype
ENSMUSG00000025983 (Ccdc150)
coiled-coil domain containing 150 		ENSMUST00000027128 (Ccdc150-001) 54250683-54368727 protein_coding
ENSMUST00000159682 (Ccdc150-005) 54354596-54368603 retained_intron
ENSMUST00000160472 (Ccdc150-003) 54250722-54368470 nonsense_mediated_decay
ENSMUST00000161988 (Ccdc150-002) 54250683-54278961 retained_intron
ENSMUST00000163072 (Ccdc150-004) 54329992-54368608 processed_transcript
ENSMUSG00000042807 (Hecw2)
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 		ENSMUST00000087659 (Hecw2-201) 53806882-54195034 protein_coding
ENSMUST00000097741 (Hecw2-202) 53930813-54195034 protein_coding
ENSMUST00000120904 (Hecw2-001) 53806876-54194048 protein_coding
ENSMUST00000146850 (Hecw2-002) 53941496-54195168 retained_intron
ENSMUST00000150677 (Hecw2-004) 53832692-53841171 processed_transcript
ENSMUST00000152870 (Hecw2-003) 53839017-53866512 processed_transcript
ENSMUSG00000094013 (Gm25829)
predicted gene, 25829 		ENSMUST00000178275 (Gm25829-201) 54249102-54249208 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002KC_0001ENSG00000119041ENST00000263956ENST00000409364ENST00000448087ENST00000448539ENST00000470386ENSG00000138411ENST00000260983ENST00000409111ENSG00000144395ENST00000389175ENST00000424427ENST00000487663ENST00000494389ENSG00000229056ENST00000430904ENST00000433933ENST00000605907ENSG00000276200ENST00000616437CIL_0002KC_0002ENSMUSG00000025983ENSMUST00000027128ENSMUST00000159682ENSMUST00000160472ENSMUST00000161988ENSMUST00000163072ENSMUSG00000042807ENSMUST00000087659ENSMUST00000097741ENSMUST00000120904ENSMUST00000146850ENSMUSG00000094013ENSMUST00000178275
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119041 ENST00000263956 4.102±0.00 N/A N/A 2.686±0.99 2.191±0.53 3.218±0.00 1.920±1.41 1.214±0.00 1.494±0.39 1.925±0.31 3.564±2.30 4.278±2.94 3.322±0.37 4.802±2.54
ENST00000409364 N/A N/A 0.737±0.00 N/A 1.434±0.00 N/A 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000416690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448087 N/A N/A N/A N/A 2.789±0.00 N/A N/A N/A N/A 2.189±0.00 N/A N/A N/A N/A
ENST00000448539 N/A N/A N/A N/A N/A N/A 2.357±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000451088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.050±0.00 N/A N/A N/A
ENST00000481098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138411 ENST00000260983 N/A 0.174±0.00 N/A 2.418±0.00 0.146±0.00 0.112±0.00 1.606±0.46 N/A 0.359±0.00 0.533±0.00 N/A 0.066±0.00 0.488±0.20 0.299±0.12
ENST00000409111 0.906±0.00 0.833±0.00 0.739±0.00 0.800±0.00 0.505±0.22 0.132±0.03 2.061±0.37 1.030±0.00 0.402±0.18 5.909±0.00 0.061±0.04 0.527±0.25 1.950±0.40 1.327±0.27
ENST00000427457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144395 ENST00000389175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.020±0.00
ENST00000409270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424427 N/A N/A 0.527±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487663 N/A N/A N/A N/A N/A N/A N/A 0.964±0.00 N/A N/A N/A N/A N/A N/A
ENST00000494389 N/A N/A N/A N/A N/A N/A N/A 1.011±0.00 N/A N/A N/A N/A N/A N/A
ENST00000495513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229056 ENST00000430904 0.106±0.00 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A 0.778±0.00 N/A 0.876±0.66 0.972±0.44 N/A
ENST00000433933 N/A N/A N/A 0.051±0.04 0.103±0.00 N/A 0.058±0.00 0.160±0.00 N/A N/A N/A 1.549±2.38 0.718±0.08 0.038±0.00
ENST00000605907 N/A N/A N/A 0.007±0.00 N/A N/A 0.044±0.00 0.112±0.00 N/A 0.351±0.00 N/A 1.369±0.00 N/A 0.264±0.00
ENSG00000276200 ENST00000616437 0.166±0.00 0.233±0.00 N/A 0.442±0.00 1.156±0.00 0.221±0.00 0.275±0.00 0.177±0.00 0.158±0.00 0.773±0.00 0.421±0.00 0.163±0.00 N/A 0.213±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025983 ENSMUST00000027128 N/A N/A 0.020±0.01 0.054±0.01 0.018±0.00 N/A N/A N/A N/A 0.077±0.06 0.012±0.00 0.138±0.01 0.040±0.03 7.960±0.49
ENSMUST00000159682 0.022±0.00 N/A 0.015±0.00 0.038±0.00 N/A N/A 0.049±0.03 0.024±0.00 0.101±0.01 0.123±0.00 N/A 0.165±0.12 0.136±0.06 N/A
ENSMUST00000160472 N/A N/A N/A 0.029±0.01 N/A N/A N/A N/A 0.031±0.01 0.021±0.00 0.007±0.00 0.151±0.09 N/A N/A
ENSMUST00000161988 N/A N/A 0.044±0.00 0.101±0.00 0.097±0.00 N/A 0.049±0.02 0.039±0.00 0.058±0.00 0.016±0.00 0.034±0.02 0.190±0.02 0.203±0.11 12.489±0.58
ENSMUST00000163072 N/A N/A 0.027±0.00 0.099±0.00 N/A N/A N/A N/A N/A N/A 0.028±0.00 0.381±0.50 0.249±0.20 38.885±67.56
ENSMUSG00000042807 ENSMUST00000087659 1.115±0.28 0.685±0.27 0.210±0.08 0.891±0.15 0.396±0.00 N/A 0.694±0.34 0.715±0.20 0.149±0.08 1.475±0.95 0.231±0.06 0.426±0.08 0.458±0.49 0.290±0.00
ENSMUST00000097741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.680±0.02
ENSMUST00000120904 0.313±0.00 1.082±0.20 0.074±0.00 0.490±0.37 0.579±0.20 0.195±0.06 N/A 1.025±0.00 0.152±0.05 3.025±0.65 N/A 1.004±0.32 N/A N/A
ENSMUST00000146850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.098±0.00 N/A N/A
ENSMUST00000150677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000094013 ENSMUST00000178275 N/A N/A 3.036±0.00 4.502±2.07 N/A N/A N/A N/A 6.207±0.00 N/A N/A N/A N/A N/A

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