C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DDB1 and CUL4 associated factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119599 DCAF4 9606 + 14:72926332-72959703 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353777 DCAF4-004 72926377-72959592 protein_coding
  ENST00000358377 DCAF4-001 72926332-72959121 protein_coding
  ENST00000394234 DCAF4-003 72926478-72959703 protein_coding
  ENST00000505361 DCAF4-007 72926501-72941902 retained_intron
  ENST00000508412 DCAF4-009 72926785-72941784 processed_transcript
  ENST00000509153 DCAF4-005 72926480-72958946 protein_coding
  ENST00000509320 DCAF4-002 72926451-72959121 nonsense_mediated_decay
  ENST00000510612 DCAF4-008 72926777-72940281 processed_transcript
  ENST00000513337 DCAF4-011 72941909-72945927 processed_transcript
  ENST00000514191 DCAF4-006 72926499-72940526 retained_intron
  ENST00000514486 DCAF4-010 72929700-72941824 processed_transcript
  ENST00000553457 DCAF4-014 72937989-72958112 protein_coding
  ENST00000555042 DCAF4-013 72926487-72959644 protein_coding
  ENST00000555992 DCAF4-015 72958715-72959375 processed_transcript
  ENST00000557203 DCAF4-016 72942719-72946029 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353777ENST00000358377ENST00000394234ENST00000508412ENST00000509153ENST00000509320ENST00000514486ENST00000553457ENST00000555042ENST00000555992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353777 N/A 1.215±0.00 N/A N/A N/A N/A N/A 1.170±0.20 0.639±0.00 1.438±0.00 N/A 1.667±0.00 2.071±0.00 1.512±0.00
ENST00000358377 N/A N/A N/A N/A N/A N/A 0.353±0.00 N/A N/A N/A N/A 0.760±0.00 N/A 1.695±0.00
ENST00000394234 0.551±0.00 1.829±0.00 N/A 1.980±0.54 1.303±0.00 0.317±0.00 0.527±0.00 0.605±0.20 0.845±0.29 N/A 1.553±0.00 3.825±1.37 3.791±1.37 1.867±0.50
ENST00000508412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.904±0.00
ENST00000509153 N/A N/A N/A N/A N/A N/A 0.421±0.07 N/A N/A N/A N/A 0.574±0.00 N/A N/A
ENST00000509320 N/A N/A N/A N/A N/A N/A N/A N/A 0.324±0.00 0.396±0.00 0.459±0.00 N/A 1.667±0.00 N/A
ENST00000514486 N/A N/A 2.269±0.00 3.760±0.00 2.373±0.00 1.949±0.00 N/A N/A N/A N/A N/A 1.975±0.00 N/A N/A
ENST00000553457 N/A 0.969±0.00 N/A N/A N/A 0.405±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555042 1.850±0.00 3.433±0.00 0.369±0.00 1.137±0.33 1.971±0.00 0.981±0.22 N/A 2.784±0.00 0.459±0.00 0.689±0.00 1.376±0.00 2.776±1.90 2.102±0.75 3.571±0.00
ENST00000555992 N/A N/A 1.326±0.00 N/A 2.855±0.00 1.483±0.00 N/A N/A N/A N/A 1.760±0.00 2.520±0.00 N/A 4.547±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033C CIL_00033C_0001 CGP 14:72619296-72959703
CIL_0008P0 CIL_0008P0_0001 VISTA 14:72878760-73482269
CIL_0000UK CIL_0000UK_0001 CGP 14:72926332-73027212

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016567 IEA protein ubiquitination
GO:0080008 IDA Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003197 wdr21 WD repeat domain 21 protein_coding Danio_rerio
ENSMUSG00000021222 Dcaf4 DDB1 and CUL4 associated factor 4 protein_coding Mus_musculus

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