C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 178, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119906 FAM178A 9606 + 10:100912569-100965136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000238961 FAM178A-001 100912569-100965136 protein_coding
  ENST00000370269 FAM178A-002 100912979-100959590 protein_coding
  ENST00000370271 FAM178A-003 100912963-100926760 protein_coding
  ENST00000481654 FAM178A-004 100943654-100945356 processed_transcript
  ENST00000609386 FAM178A-005 100912996-100913886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000238961ENST00000370269ENST00000370271
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000238961 2.664±0.00 3.351±0.00 1.520±0.00 3.573±0.34 1.265±0.00 3.495±0.46 2.005±0.66 2.872±0.81 2.169±1.50 2.629±1.22 3.442±1.82 2.932±2.28 2.735±1.38 12.300±0.36
ENST00000370269 N/A N/A 1.705±0.00 0.894±0.00 6.563±0.00 N/A 0.921±0.00 0.598±0.00 2.523±0.00 2.609±0.00 N/A 2.884±0.00 N/A N/A
ENST00000370271 N/A N/A N/A 1.277±0.00 N/A 2.726±0.00 0.734±0.00 0.723±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082U CIL_00082U_0001 VISTA 10:100312457-100914449
CIL_00082V CIL_00082V_0001 VISTA 10:100315129-100915721
CIL_00093R CIL_00093R_0001 VISTA 10:100355158-100955821
CIL_00093O CIL_00093O_0001 VISTA 10:100359362-100959974
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_0003MX CIL_0003MX_0001 CGP 10:100735603-100965136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003328 fam178a family with sequence similarity 178, member A protein_coding Danio_rerio
ENSMUSG00000036097 Fam178a family with sequence similarity 178, member A protein_coding Mus_musculus

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