C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00082V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs225 VISTA 9606 10:100315129-100915721
GeneTranscriptPositionBiotype
ENSG00000075290 (WNT8B)
wingless-type MMTV integration site family, member 8B 		ENST00000343737 (WNT8B-001) 100463041-100483744 protein_coding
ENSG00000075891 (PAX2)
paired box 2 		ENST00000355243 (PAX2-001) 100745711-100829941 protein_coding
ENST00000361791 (PAX2-006) 100746220-100829589 protein_coding
ENST00000370296 (PAX2-002) 100745711-100829941 protein_coding
ENST00000427256 (PAX2-003) 100746228-100786970 protein_coding
ENST00000428433 (PAX2-201) 100745711-100829941 protein_coding
ENST00000483202 (PAX2-004) 100746264-100749916 retained_intron
ENST00000553492 (PAX2-008) 100735603-100806599 processed_transcript
ENST00000554172 (PAX2-005) 100748850-100824654 protein_coding
ENST00000554363 (PAX2-007) 100746179-100809184 processed_transcript
ENSG00000099194 (SCD)
stearoyl-CoA desaturase (delta-9-desaturase) 		ENST00000370355 (SCD-001) 100347124-100364834 protein_coding
ENSG00000107593 (PKD2L1)
polycystic kidney disease 2-like 1 		ENST00000318222 (PKD2L1-001) 100288154-100330486 protein_coding
ENST00000465680 (PKD2L1-002) 100288160-100329972 protein_coding
ENST00000528248 (PKD2L1-004) 100288396-100329940 nonsense_mediated_decay
ENST00000532547 (PKD2L1-003) 100299635-100330264 nonsense_mediated_decay
ENSG00000119906 (FAM178A)
family with sequence similarity 178, member A 		ENST00000238961 (FAM178A-001) 100912569-100965136 protein_coding
ENST00000370269 (FAM178A-002) 100912979-100959590 protein_coding
ENST00000370271 (FAM178A-003) 100912963-100926760 protein_coding
ENST00000481654 (FAM178A-004) 100943654-100945356 processed_transcript
ENST00000609386 (FAM178A-005) 100912996-100913886 protein_coding
ENSG00000166135 (HIF1AN)
hypoxia inducible factor 1, alpha subunit inhibitor 		ENST00000299163 (HIF1AN-002) 100535859-100559998 protein_coding
ENST00000478787 (HIF1AN-003) 100536470-100545497 retained_intron
ENST00000526476 (HIF1AN-005) 100535915-100545968 nonsense_mediated_decay
ENST00000528044 (HIF1AN-006) 100536198-100540728 processed_transcript
ENST00000533589 (HIF1AN-004) 100529072-100546581 protein_coding
ENSG00000166136 (NDUFB8)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 		ENST00000299166 (NDUFB8-005) 100523740-100529864 protein_coding
ENST00000370320 (NDUFB8-003) 100523937-100529864 protein_coding
ENST00000370322 (NDUFB8-006) 100523743-100530000 protein_coding
ENST00000464651 (NDUFB8-001) 100523740-100526598 retained_intron
ENST00000466088 (NDUFB8-004) 100526049-100529862 retained_intron
ENST00000528425 (NDUFB8-010) 100524033-100529870 nonsense_mediated_decay
ENST00000529437 (NDUFB8-007) 100526717-100529883 retained_intron
ENST00000531189 (NDUFB8-009) 100529043-100529879 retained_intron
ENST00000531418 (NDUFB8-008) 100526744-100529879 retained_intron
ENSG00000212325 (Y_RNA)
Y RNA 		ENST00000391023 (Y_RNA.1-784) 100398352-100398446 misc_RNA
ENSG00000231188 (RP11-34D15.2)
 ENST00000429420 (RP11-34D15.2-001) 100335563-100346390 antisense
ENSG00000235823 (LINC00263)
long intergenic non-protein coding RNA 263 		ENST00000454935 (LINC00263-001) 100373615-100383368 lincRNA
ENSG00000273030 (RP11-285F16.1)
 ENST00000608396 (RP11-285F16.1-001) 100412934-100413421 lincRNA
ENSG00000274660 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000613464 (Metazoa_SRP.1-289) 100666695-100667009 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00082V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs225 VISTA 10090 19:44333644-44934226
GeneTranscriptPositionBiotype
ENSMUSG00000004231 (Pax2)
paired box 2 		ENSMUST00000004340 (Pax2-201) 44757394-44837871 protein_coding
ENSMUST00000173346 (Pax2-004) 44759915-44818554 protein_coding
ENSMUST00000174490 (Pax2-001) 44756045-44837851 protein_coding
ENSMUSG00000025204 (Ndufb8)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 		ENSMUST00000026222 (Ndufb8-001) 44550240-44555440 protein_coding
ENSMUST00000164543 (Ndufb8-008) 44550255-44552880 retained_intron
ENSMUST00000166557 (Ndufb8-004) 44554715-44555423 retained_intron
ENSMUST00000167027 (Ndufb8-006) 44552840-44555404 protein_coding
ENSMUST00000168083 (Ndufb8-005) 44550253-44555419 nonsense_mediated_decay
ENSMUST00000168474 (Ndufb8-003) 44554701-44555426 retained_intron
ENSMUST00000169181 (Ndufb8-007) 44553275-44555405 retained_intron
ENSMUST00000169304 (Ndufb8-009) 44552622-44554986 protein_coding
ENSMUST00000171415 (Ndufb8-002) 44548572-44555426 protein_coding
ENSMUSG00000036097 (Fam178a)
family with sequence similarity 178, member A 		ENSMUST00000096053 (Fam178a-201) 44931119-44983787 protein_coding
ENSMUSG00000036450 (Hif1an)
hypoxia-inducible factor 1, alpha subunit inhibitor 		ENSMUST00000040455 (Hif1an-001) 44562850-44576274 protein_coding
ENSMUST00000131032 (Hif1an-002) 44562850-44563952 retained_intron
ENSMUSG00000036961 (Wnt8b)
wingless-type MMTV integration site family, member 8B 		ENSMUST00000041163 (Wnt8b-201) 44493472-44514273 protein_coding
ENSMUSG00000037071 (Scd1)
stearoyl-Coenzyme A desaturase 1 		ENSMUST00000041331 (Scd1-201) 44394451-44407709 protein_coding
ENSMUSG00000050195 (Scd4)
stearoyl-coenzyme A desaturase 4 		ENSMUST00000058856 (Scd4-001) 44333092-44346743 protein_coding
ENSMUST00000133314 (Scd4-002) 44333092-44334723 retained_intron
ENSMUSG00000051984 (Sec31b)
Sec31 homolog B (S. cerevisiae) 		ENSMUST00000063632 (Sec31b-001) 44516957-44545864 protein_coding
ENSMUST00000111985 (Sec31b-002) 44517207-44545847 protein_coding
ENSMUST00000165758 (Sec31b-004) 44517644-44520593 nonsense_mediated_decay
ENSMUSG00000092369 (1700039E22Rik)
RIKEN cDNA 1700039E22 gene 		ENSMUST00000174082 (1700039E22Rik-001) 44828493-44835938 antisense
ENSMUSG00000092469 (Gm20395)
predicted gene 20395 		ENSMUST00000173799 (Gm20395-001) 44773762-44784512 antisense
ENSMUSG00000097683 (Gm26644)
predicted gene, 26644 		ENSMUST00000181365 (Gm26644-201) 44692367-44695275 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00082V_0001ENSG00000075290ENST00000343737ENSG00000075891ENST00000355243ENST00000361791ENST00000370296ENST00000427256ENST00000428433ENST00000483202ENST00000553492ENST00000554172ENST00000554363ENSG00000099194ENST00000370355ENSG00000107593ENST00000318222ENST00000465680ENST00000528248ENST00000532547ENSG00000119906ENST00000238961ENST00000370269ENST00000370271ENST00000481654ENST00000609386ENSG00000166135ENST00000299163ENST00000478787ENST00000526476ENST00000528044ENST00000533589ENSG00000166136ENST00000299166ENST00000370320ENST00000370322ENST00000464651ENST00000466088ENST00000528425ENST00000529437ENST00000531189ENST00000531418ENSG00000212325ENST00000391023ENSG00000231188ENST00000429420ENSG00000235823ENST00000454935ENSG00000273030ENST00000608396ENSG00000274660ENST00000613464CIL_00082V_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00082V_0001ENSG00000075290ENST00000343737ENSG00000075891ENST00000355243ENST00000361791ENST00000427256ENST00000483202ENST00000553492ENST00000554172ENSG00000099194ENST00000370355ENSG00000107593ENST00000318222ENST00000465680ENST00000528248ENST00000532547ENSG00000119906ENST00000238961ENST00000370269ENST00000370271ENSG00000166135ENST00000299163ENST00000533589ENSG00000166136ENST00000299166ENST00000464651ENST00000466088ENSG00000212325ENST00000391023ENSG00000231188ENST00000429420ENSG00000235823ENST00000454935ENSG00000273030ENST00000608396ENSG00000274660ENST00000613464CIL_00082V_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075290 ENST00000343737 N/A 0.019±0.00 0.104±0.00 0.066±0.00 0.061±0.03 0.138±0.00 N/A 0.070±0.00 0.149±0.00 0.151±0.13 N/A 0.172±0.08 0.029±0.00 0.213±0.09
ENSG00000075891 ENST00000355243 N/A N/A N/A N/A N/A N/A N/A 5.431±0.00 N/A N/A N/A N/A N/A N/A
ENST00000361791 N/A 0.019±0.00 N/A 0.129±0.00 N/A N/A N/A 11.684±0.00 N/A 0.060±0.00 N/A 0.838±1.09 0.087±0.00 1.738±1.54
ENST00000370296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427256 N/A N/A N/A N/A 0.314±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00
ENST00000428433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483202 N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A 0.048±0.00 2.858±0.00
ENST00000553492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENST00000554172 N/A N/A 2.742±0.00 N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A 0.064±0.00 N/A N/A
ENST00000554363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000099194 ENST00000370355 62.220±0.00 13.743±0.00 N/A 206.879±143.10 921.563±890.76 62.315±49.79 6.454±3.86 99.238±95.51 140.027±41.51 31.622±2.08 3.559±3.29 78.320±32.93 12.329±2.75 29.791±9.70
ENSG00000107593 ENST00000318222 N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A 0.295±0.00
ENST00000465680 N/A 0.315±0.00 N/A N/A N/A 0.809±0.00 N/A N/A 0.178±0.00 N/A N/A 0.850±0.17 0.140±0.01 0.156±0.00
ENST00000528248 0.061±0.00 0.067±0.00 N/A 0.272±0.07 0.029±0.01 N/A 0.030±0.02 0.203±0.04 0.007±0.00 0.035±0.00 0.056±0.00 0.446±0.33 0.068±0.05 0.247±0.01
ENST00000532547 N/A N/A N/A 0.449±0.00 N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A N/A N/A
ENSG00000119906 ENST00000238961 2.664±0.00 3.351±0.00 1.520±0.00 3.573±0.34 1.265±0.00 3.495±0.46 2.005±0.66 2.872±0.81 2.169±1.50 2.629±1.22 3.442±1.82 2.932±2.28 2.735±1.38 12.300±0.36
ENST00000370269 N/A N/A 1.705±0.00 0.894±0.00 6.563±0.00 N/A 0.921±0.00 0.598±0.00 2.523±0.00 2.609±0.00 N/A 2.884±0.00 N/A N/A
ENST00000370271 N/A N/A N/A 1.277±0.00 N/A 2.726±0.00 0.734±0.00 0.723±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166135 ENST00000299163 2.530±0.00 1.983±0.00 0.676±0.00 2.130±0.89 2.430±1.35 3.203±0.00 2.187±1.55 2.216±1.78 1.343±0.16 1.200±0.46 4.029±2.49 3.704±1.75 3.067±1.08 7.327±0.80
ENST00000478787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.107±0.00
ENSG00000166136 ENST00000299166 98.090±0.00 160.945±0.00 12.145±0.00 153.317±59.38 124.483±0.00 109.776±70.50 90.729±58.53 107.336±68.80 70.003±36.76 50.896±37.82 47.134±1.26 128.575±67.11 111.180±25.53 132.320±0.00
ENST00000370320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464651 N/A N/A 21.870±0.00 N/A N/A N/A N/A N/A N/A N/A 44.449±0.00 N/A N/A N/A
ENST00000466088 N/A N/A N/A N/A 10.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212325 ENST00000391023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.975±0.00 N/A N/A
ENSG00000231188 ENST00000429420 N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.06 N/A 1.843±1.19
ENSG00000235823 ENST00000454935 1.383±0.00 2.452±0.00 0.784±0.00 4.029±3.53 2.301±1.51 1.144±0.33 0.377±0.21 1.570±0.01 1.015±0.42 1.669±0.61 0.948±0.00 2.292±0.64 0.952±0.04 2.460±0.19
ENSG00000273030 ENST00000608396 0.078±0.00 N/A N/A 0.153±0.00 0.200±0.00 0.742±0.56 N/A 0.075±0.00 0.064±0.00 0.107±0.00 N/A 0.583±0.32 0.188±0.00 0.072±0.00
ENSG00000274660 ENST00000613464 0.103±0.00 2.040±0.00 N/A 0.584±0.00 0.721±0.00 0.356±0.00 0.201±0.00 0.880±0.00 N/A 1.303±0.00 1.911±0.00 0.364±0.00 N/A 0.296±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004231 ENSMUST00000004340 1.448±0.00 N/A 0.016±0.00 1.724±2.28 N/A 0.010±0.00 0.008±0.00 5.372±1.15 N/A N/A N/A 0.946±0.48 0.439±0.37 0.722±0.35
ENSMUST00000173346 0.874±0.00 N/A 0.002±0.00 0.013±0.00 N/A N/A N/A N/A 0.015±0.00 0.020±0.00 N/A N/A 0.027±0.00 N/A
ENSMUST00000174490 0.797±0.06 N/A 0.003±0.00 1.354±1.75 N/A N/A N/A 3.434±0.86 0.004±0.00 N/A N/A 0.776±0.26 0.092±0.07 0.401±0.00
ENSMUSG00000025204 ENSMUST00000026222 357.715±63.59 261.912±62.56 212.655±34.76 142.515±64.90 409.505±97.89 333.237±47.34 1028.320±115.80 698.125±105.47 224.082±34.93 151.657±17.13 495.564±26.78 317.808±151.15 108.771±45.88 224.617±105.44
ENSMUST00000164543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.205±14.08 96.276±8.06 N/A
ENSMUST00000166557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167027 N/A N/A N/A 75.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 29.378±0.00 51.956±0.00
ENSMUST00000168083 N/A N/A N/A 30.959±0.00 510.379±0.00 N/A 194.499±0.00 N/A N/A 40.982±0.00 N/A 31.999±8.72 16.642±1.91 35.172±12.88
ENSMUST00000168474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169304 N/A 114.463±14.49 N/A N/A 390.918±49.95 N/A N/A N/A 121.269±15.35 N/A N/A 75.128±6.92 N/A N/A
ENSMUST00000171415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.929±0.26 N/A N/A
ENSMUSG00000036097 ENSMUST00000096053 3.386±1.38 5.470±4.27 6.024±0.54 8.819±3.72 5.879±6.02 2.538±0.30 2.475±0.39 2.607±0.73 3.323±2.01 5.256±2.62 1.976±0.35 8.251±2.21 11.328±3.50 4.560±0.47
ENSMUSG00000036450 ENSMUST00000040455 8.670±4.29 8.410±1.19 6.297±0.62 7.057±3.31 12.540±5.30 11.945±1.66 7.458±1.29 8.573±0.37 5.307±1.89 14.135±1.95 42.374±4.96 13.088±3.38 10.112±3.75 9.106±2.58
ENSMUST00000131032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036961 ENSMUST00000041163 0.124±0.03 0.075±0.04 0.012±0.00 0.745±0.56 0.029±0.01 0.312±0.08 0.009±0.00 0.061±0.02 0.005±0.00 0.018±0.01 0.018±0.01 0.052±0.03 0.011±0.00 0.151±0.04
ENSMUSG00000037071 ENSMUST00000041331 3643.590±34.57 1405.230±827.14 86.339±8.01 7.636±5.56 4635.698±723.52 20.853±4.41 146.593±36.33 484.205±69.08 592.019±622.47 687.916±215.35 16.833±8.92 193.758±120.16 12.376±9.47 5.512±2.88
ENSMUSG00000050195 ENSMUST00000058856 0.364±0.07 0.177±0.05 0.112±0.05 0.120±0.02 0.166±0.06 0.262±0.06 3.883±1.25 0.120±0.02 0.043±0.02 0.430±0.13 0.036±0.03 0.248±0.10 0.437±0.49 0.191±0.08
ENSMUST00000133314 N/A 0.304±0.00 N/A N/A N/A N/A N/A 0.058±0.00 0.055±0.02 N/A 0.041±0.00 0.229±0.07 N/A 0.076±0.00
ENSMUSG00000051984 ENSMUST00000063632 N/A 6.171±0.97 N/A N/A N/A N/A N/A N/A N/A N/A 11.540±0.64 4.793±1.92 N/A N/A
ENSMUST00000111985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.240±0.00 N/A 1.013±0.00
ENSMUST00000165758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092369 ENSMUST00000174082 0.277±0.06 N/A N/A 0.178±0.00 N/A N/A N/A 0.470±0.23 N/A N/A N/A 0.217±0.12 0.127±0.05 0.443±0.16
ENSMUSG00000092469 ENSMUST00000173799 N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.118±0.06 N/A N/A N/A 0.241±0.22 0.042±0.03 0.097±0.00
ENSMUSG00000097683 ENSMUST00000181365 N/A N/A N/A 0.193±0.00 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A 0.047±0.05 N/A

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