C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003MX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000075891-ENSG00000119906 CGP 9606 10:100735603-100965136
GeneTranscriptPositionBiotype
ENSG00000075891 (PAX2)
paired box 2 		ENST00000355243 (PAX2-001) 100745711-100829941 protein_coding
ENST00000361791 (PAX2-006) 100746220-100829589 protein_coding
ENST00000370296 (PAX2-002) 100745711-100829941 protein_coding
ENST00000427256 (PAX2-003) 100746228-100786970 protein_coding
ENST00000428433 (PAX2-201) 100745711-100829941 protein_coding
ENST00000483202 (PAX2-004) 100746264-100749916 retained_intron
ENST00000553492 (PAX2-008) 100735603-100806599 processed_transcript
ENST00000554172 (PAX2-005) 100748850-100824654 protein_coding
ENST00000554363 (PAX2-007) 100746179-100809184 processed_transcript
ENSG00000119906 (FAM178A)
family with sequence similarity 178, member A 		ENST00000238961 (FAM178A-001) 100912569-100965136 protein_coding
ENST00000370269 (FAM178A-002) 100912979-100959590 protein_coding
ENST00000370271 (FAM178A-003) 100912963-100926760 protein_coding
ENST00000481654 (FAM178A-004) 100943654-100945356 processed_transcript
ENST00000609386 (FAM178A-005) 100912996-100913886 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0003MX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004231-ENSMUSG00000036097 CGP 10090 19:44756045-44983787
GeneTranscriptPositionBiotype
ENSMUSG00000004231 (Pax2)
paired box 2 		ENSMUST00000004340 (Pax2-201) 44757394-44837871 protein_coding
ENSMUST00000173346 (Pax2-004) 44759915-44818554 protein_coding
ENSMUST00000174490 (Pax2-001) 44756045-44837851 protein_coding
ENSMUSG00000036097 (Fam178a)
family with sequence similarity 178, member A 		ENSMUST00000096053 (Fam178a-201) 44931119-44983787 protein_coding
ENSMUSG00000092369 (1700039E22Rik)
RIKEN cDNA 1700039E22 gene 		ENSMUST00000174082 (1700039E22Rik-001) 44828493-44835938 antisense
ENSMUSG00000092469 (Gm20395)
predicted gene 20395 		ENSMUST00000173799 (Gm20395-001) 44773762-44784512 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MX_0001ENSG00000075891ENST00000355243ENST00000361791ENST00000370296ENST00000427256ENST00000428433ENST00000483202ENST00000553492ENST00000554172ENST00000554363ENSG00000119906ENST00000238961ENST00000370269ENST00000370271ENST00000481654ENST00000609386CIL_0003MX_0002ENSMUSG00000004231ENSMUST00000004340ENSMUST00000173346ENSMUST00000174490ENSMUSG00000036097ENSMUST00000096053ENSMUSG00000092369ENSMUST00000174082ENSMUSG00000092469ENSMUST00000173799
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MX_0001ENSG00000075891ENST00000355243ENST00000361791ENST00000427256ENST00000483202ENST00000553492ENST00000554172ENSG00000119906ENST00000238961ENST00000370269ENST00000370271CIL_0003MX_0002ENSMUSG00000004231ENSMUST00000004340ENSMUST00000173346ENSMUST00000174490ENSMUSG00000036097ENSMUST00000096053ENSMUSG00000092369ENSMUST00000174082ENSMUSG00000092469ENSMUST00000173799
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075891 ENST00000355243 N/A N/A N/A N/A N/A N/A N/A 5.431±0.00 N/A N/A N/A N/A N/A N/A
ENST00000361791 N/A 0.019±0.00 N/A 0.129±0.00 N/A N/A N/A 11.684±0.00 N/A 0.060±0.00 N/A 0.838±1.09 0.087±0.00 1.738±1.54
ENST00000370296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427256 N/A N/A N/A N/A 0.314±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00
ENST00000428433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483202 N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A 0.048±0.00 2.858±0.00
ENST00000553492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENST00000554172 N/A N/A 2.742±0.00 N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A 0.064±0.00 N/A N/A
ENST00000554363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000119906 ENST00000238961 2.664±0.00 3.351±0.00 1.520±0.00 3.573±0.34 1.265±0.00 3.495±0.46 2.005±0.66 2.872±0.81 2.169±1.50 2.629±1.22 3.442±1.82 2.932±2.28 2.735±1.38 12.300±0.36
ENST00000370269 N/A N/A 1.705±0.00 0.894±0.00 6.563±0.00 N/A 0.921±0.00 0.598±0.00 2.523±0.00 2.609±0.00 N/A 2.884±0.00 N/A N/A
ENST00000370271 N/A N/A N/A 1.277±0.00 N/A 2.726±0.00 0.734±0.00 0.723±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004231 ENSMUST00000004340 1.448±0.00 N/A 0.016±0.00 1.724±2.28 N/A 0.010±0.00 0.008±0.00 5.372±1.15 N/A N/A N/A 0.946±0.48 0.439±0.37 0.722±0.35
ENSMUST00000173346 0.874±0.00 N/A 0.002±0.00 0.013±0.00 N/A N/A N/A N/A 0.015±0.00 0.020±0.00 N/A N/A 0.027±0.00 N/A
ENSMUST00000174490 0.797±0.06 N/A 0.003±0.00 1.354±1.75 N/A N/A N/A 3.434±0.86 0.004±0.00 N/A N/A 0.776±0.26 0.092±0.07 0.401±0.00
ENSMUSG00000036097 ENSMUST00000096053 3.386±1.38 5.470±4.27 6.024±0.54 8.819±3.72 5.879±6.02 2.538±0.30 2.475±0.39 2.607±0.73 3.323±2.01 5.256±2.62 1.976±0.35 8.251±2.21 11.328±3.50 4.560±0.47
ENSMUSG00000092369 ENSMUST00000174082 0.277±0.06 N/A N/A 0.178±0.00 N/A N/A N/A 0.470±0.23 N/A N/A N/A 0.217±0.12 0.127±0.05 0.443±0.16
ENSMUSG00000092469 ENSMUST00000173799 N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.118±0.06 N/A N/A N/A 0.241±0.22 0.042±0.03 0.097±0.00

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