C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: survival motor neuron domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119953 SMNDC1 9606 - 10:110290730-110304951 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369592 SMNDC1-002 110294062-110304697 protein_coding
  ENST00000369603 SMNDC1-001 110290730-110304951 protein_coding
  ENST00000460483 SMNDC1-003 110295230-110304906 processed_transcript
  ENST00000471297 SMNDC1-004 110297570-110304938 processed_transcript
  ENST00000477763 SMNDC1-005 110298677-110304131 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369592ENST00000369603ENST00000460483ENST00000471297
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369592 6.781±0.00 N/A N/A 6.240±0.00 4.264±2.34 4.485±0.00 N/A N/A 2.748±0.00 N/A N/A 41.373±0.00 3.816±1.05 19.746±7.06
ENST00000369603 N/A 0.794±0.00 0.628±0.00 1.183±0.30 1.954±0.00 1.020±0.00 0.311±0.11 0.894±0.00 0.501±0.19 1.095±0.00 1.012±0.47 2.210±1.41 2.942±0.35 4.046±0.88
ENST00000460483 N/A N/A N/A N/A N/A 2.485±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471297 N/A N/A 0.890±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UR CIL_0000UR_0001 CGP 10:110290730-110511544

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IDA:IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 TAS RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056235 smndc1 survival motor neuron domain containing 1 protein_coding Danio_rerio
ENSMUSG00000025024 Smndc1 survival motor neuron domain containing 1 protein_coding Mus_musculus

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