C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: survival motor neuron domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369592 SMNDC1-002 ENSG00000119953 9606 - 10:110294062-110304697 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverOvaryPlacentaTestisENST00000369592
Transcript ID Adipose Brain Breast Colon Liver Ovary Placenta Testis
ENST00000369592 6.781±0.00 6.240±0.00 4.264±2.34 4.485±0.00 2.748±0.00 41.373±0.00 3.816±1.05 19.746±7.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UR CIL_0000UR_0001 CGP 10:110290730-110511544

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IDA:IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 TAS RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025997 Smndc1-201 protein_coding Mus_musculus 0 1013
ENSMUST00000176461 Gm5871-001 processed_pseudogene Mus_musculus 0 865

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