C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120075 HOXB5 9606 - 17:48591257-48593961 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000239151 HOXB5-001 48591257-48593961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverLungPlacentaTestisENST00000239151
Transcript ID Colon Kidney Liver Lung Placenta Testis
ENST00000239151 13.759±0.00 13.080±0.00 0.665±0.00 7.535±0.00 1.385±0.31 6.646±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0045446 IEA endothelial cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013057 hoxb5a homeo box B5a protein_coding Danio_rerio
ENSDARG00000054030 hoxb5b homeo box B5b protein_coding Danio_rerio
ENSMUSG00000038700 Hoxb5 homeobox B5 protein_coding Mus_musculus

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