C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038700 Hoxb5 10090 + 11:96303336-96306121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049272 Hoxb5-001 96303512-96306120 protein_coding
  ENSMUST00000190470 Hoxb5-002 96303336-96306121 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049272ENSMUST00000190470
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049272 3.088±0.05 18.432±2.30 8.017±6.70 2.140±0.99 4.423±0.51 0.082±0.02 2.897±0.28 0.228±0.06 6.557±1.16 0.206±0.11 3.082±1.04 0.189±0.07 0.199±0.13
ENSMUST00000190470 0.412±0.01 2.726±0.22 N/A 0.284±0.14 0.745±0.15 N/A 0.545±0.01 0.026±0.00 N/A 0.067±0.03 0.608±0.23 0.105±0.05 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0000W8 CIL_0000W8_0003 CGP 11:96292476-96306121
CIL_0004DH CIL_0004DH_0002 CGP 11:96303336-96321638

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0045446 IDA endothelial cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013057 hoxb5a homeo box B5a protein_coding Danio_rerio
ENSDARG00000054030 hoxb5b homeo box B5b protein_coding Danio_rerio
ENSG00000120075 HOXB5 homeobox B5 protein_coding Homo_sapiens

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