C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239151 HOXB5-001 ENSG00000120075 9606 - 17:48591257-48593961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverLungPlacentaTestisENST00000239151
Transcript ID Colon Kidney Liver Lung Placenta Testis
ENST00000239151 13.759±0.00 13.080±0.00 0.665±0.00 7.535±0.00 1.385±0.31 6.646±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0045446 IEA endothelial cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049272 Hoxb5-001 protein_coding Mus_musculus 0 2285
ENSMUST00000190470 Hoxb5-002 retained_intron Mus_musculus 0 1393
ENSDART00000025449 hoxb5a-001 protein_coding Danio_rerio 0 497
ENSMUST00000062829 Hoxa6-001 protein_coding Mus_musculus 0 195
ENSMUST00000048715 Hoxa7-201 protein_coding Mus_musculus 0 193
ENSMUST00000134367 Hoxa7-004 protein_coding Mus_musculus 0 193
ENSMUST00000153280 Hoxa7-002 nonsense_mediated_decay Mus_musculus 0 193
ENSMUST00000049241 Hoxb4-001 protein_coding Mus_musculus 5.04467e-44 183
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 8e-27 126
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 8e-27 126
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 8e-27 126
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 8e-27 126
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 8e-27 126
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 8e-27 126
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 3e-26 124
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 3e-26 124
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 5e-24 117
ENSDART00000012470 hoxb4a-001 protein_coding Danio_rerio 3e-21 108
ENSDART00000151584 hoxb4a-002 protein_coding Danio_rerio 3e-21 108
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 1e-20 106
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 4e-20 104
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 4e-20 104
ENSMUST00000123805 Hoxb1-002 processed_transcript Mus_musculus 0.0000002 62
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 0.0000002 62

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