C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA terminal phosphate cyclase-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120158 RCL1 9606 + 9:4792834-4885917 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381728 RCL1-006 4839518-4860292 protein_coding
  ENST00000381730 RCL1-002 4836726-4860472 protein_coding
  ENST00000381732 RCL1-004 4792976-4827337 protein_coding
  ENST00000381750 RCL1-001 4792869-4861064 protein_coding
  ENST00000441844 RCL1-007 4839777-4849550 protein_coding
  ENST00000442869 RCL1-003 4792980-4860173 protein_coding
  ENST00000445485 RCL1-008 4860454-4885917 processed_transcript
  ENST00000448872 RCL1-201 4839769-4861075 protein_coding
  ENST00000473230 RCL1-005 4793087-4841357 processed_transcript
  ENST00000615460 RCL1-202 4792834-4861075 protein_coding
  ENST00000623584 RCL1-203 4792834-4861075 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381728ENST00000381730ENST00000381750ENST00000442869ENST00000445485ENST00000448872ENST00000615460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.255±0.00
ENST00000381730 N/A N/A N/A N/A N/A N/A N/A 9.700±0.00 N/A N/A N/A N/A N/A N/A
ENST00000381750 6.999±0.00 8.532±0.00 0.829±0.00 1.824±0.89 3.302±1.88 2.531±0.94 1.464±1.15 6.430±0.00 3.608±3.21 2.378±0.65 1.646±0.91 5.982±2.66 8.705±2.51 5.406±1.01
ENST00000442869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.773±0.00
ENST00000445485 N/A N/A 0.582±0.00 1.018±0.00 N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000448872 N/A N/A N/A N/A N/A 0.799±0.00 0.456±0.00 11.559±0.00 22.865±0.00 N/A N/A N/A N/A N/A
ENST00000615460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A N/A 1.331±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YJ CIL_0003YJ_0001 CGP 9:4709559-4885917
CIL_0000NF CIL_0000NF_0001 CGP 9:4792834-5128183

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005730 IEA nucleolus
GO:0006396 IEA RNA processing
GO:0008150 ND biological_process
GO:0042254 IEA ribosome biogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038312 rcl1 RNA terminal phosphate cyclase-like 1 protein_coding Danio_rerio
ENSMUSG00000024785 Rcl1 RNA terminal phosphate cyclase-like 1 protein_coding Mus_musculus

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