C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147853-ENSG00000120158 CGP 9606 9:4709559-4885917
GeneTranscriptPositionBiotype
ENSG00000120158 (RCL1)
RNA terminal phosphate cyclase-like 1 		ENST00000381728 (RCL1-006) 4839518-4860292 protein_coding
ENST00000381730 (RCL1-002) 4836726-4860472 protein_coding
ENST00000381732 (RCL1-004) 4792976-4827337 protein_coding
ENST00000381750 (RCL1-001) 4792869-4861064 protein_coding
ENST00000441844 (RCL1-007) 4839777-4849550 protein_coding
ENST00000442869 (RCL1-003) 4792980-4860173 protein_coding
ENST00000445485 (RCL1-008) 4860454-4885917 processed_transcript
ENST00000448872 (RCL1-201) 4839769-4861075 protein_coding
ENST00000473230 (RCL1-005) 4793087-4841357 processed_transcript
ENST00000615460 (RCL1-202) 4792834-4861075 protein_coding
ENST00000623584 (RCL1-203) 4792834-4861075 protein_coding
ENSG00000147853 (AK3)
adenylate kinase 3 		ENST00000359883 (AK3-001) 4712045-4742043 protein_coding
ENST00000381809 (AK3-002) 4711155-4741318 protein_coding
ENST00000447596 (AK3-003) 4712975-4741227 protein_coding
ENST00000611749 (AK3-201) 4709559-4741799 protein_coding
ENSG00000220105 (RP11-307I14.2)
 ENST00000402406 (RP11-307I14.2-001) 4781475-4782078 processed_pseudogene
ENSG00000233186 (KLF4P1)
Kruppel-like factor 4 (gut) pseudogene 1 		ENST00000412782 (KLF4P1-001) 4803788-4804972 processed_pseudogene
ENSG00000270639 (ECM1P1)
extracellular matrix protein 1 pseudogene 1 		ENST00000604092 (ECM1P1-001) 4768617-4769895 processed_pseudogene
ENSG00000276893 (AL136231.1)
 ENST00000620746 (AL136231.1-201) 4719746-4719841 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003YJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024782-ENSMUSG00000024785 CGP 10090 19:29020833-29143843
GeneTranscriptPositionBiotype
ENSMUSG00000024782 (Ak3)
adenylate kinase 3 		ENSMUST00000025696 (Ak3-001) 29020833-29047961 protein_coding
ENSMUST00000125587 (Ak3-002) 29025901-29027244 protein_coding
ENSMUSG00000024785 (Rcl1)
RNA terminal phosphate cyclase-like 1 		ENSMUST00000064393 (Rcl1-201) 29101375-29143843 protein_coding
ENSMUSG00000065556 (Mir101b)
microRNA 101b 		ENSMUST00000083622 (Mir101b-201) 29135279-29135375 miRNA
ENSMUSG00000100075 (RP23-18G1.2)
RIKEN cDNA 1700018L02 gene 		ENSMUST00000187897 (RP23-18G1.2-001) 29046245-29048729 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YJ_0001ENSG00000120158ENST00000381728ENST00000381730ENST00000381732ENST00000381750ENST00000441844ENST00000442869ENST00000445485ENST00000448872ENST00000473230ENST00000615460ENST00000623584ENSG00000147853ENST00000359883ENST00000381809ENST00000447596ENST00000611749ENSG00000220105ENST00000402406ENSG00000233186ENST00000412782ENSG00000270639ENST00000604092ENSG00000276893ENST00000620746CIL_0003YJ_0002ENSMUSG00000024782ENSMUST00000025696ENSMUST00000125587ENSMUSG00000024785ENSMUST00000064393ENSMUSG00000065556ENSMUST00000083622ENSMUSG00000100075ENSMUST00000187897
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YJ_0001ENSG00000120158ENST00000381728ENST00000381730ENST00000381750ENST00000442869ENST00000445485ENST00000448872ENST00000615460ENSG00000147853ENST00000359883ENST00000381809ENST00000447596ENST00000611749ENSG00000220105ENST00000402406ENSG00000233186ENST00000412782ENSG00000270639ENST00000604092ENSG00000276893ENST00000620746CIL_0003YJ_0002ENSMUSG00000024782ENSMUST00000025696ENSMUSG00000024785ENSMUST00000064393ENSMUSG00000065556ENSMUST00000083622ENSMUSG00000100075ENSMUST00000187897
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120158 ENST00000381728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.255±0.00
ENST00000381730 N/A N/A N/A N/A N/A N/A N/A 9.700±0.00 N/A N/A N/A N/A N/A N/A
ENST00000381732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000381750 6.999±0.00 8.532±0.00 0.829±0.00 1.824±0.89 3.302±1.88 2.531±0.94 1.464±1.15 6.430±0.00 3.608±3.21 2.378±0.65 1.646±0.91 5.982±2.66 8.705±2.51 5.406±1.01
ENST00000441844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.773±0.00
ENST00000445485 N/A N/A 0.582±0.00 1.018±0.00 N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000448872 N/A N/A N/A N/A N/A 0.799±0.00 0.456±0.00 11.559±0.00 22.865±0.00 N/A N/A N/A N/A N/A
ENST00000473230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A N/A 1.331±0.00
ENST00000623584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147853 ENST00000359883 N/A N/A N/A N/A N/A 1.594±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000381809 13.622±0.00 21.163±0.00 3.245±0.00 13.207±7.69 17.355±14.88 15.186±13.45 28.953±25.78 20.544±13.38 22.930±16.50 14.443±9.86 16.410±12.58 14.731±8.21 11.898±3.70 11.103±6.88
ENST00000447596 N/A N/A 4.348±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611749 N/A N/A N/A N/A N/A 0.873±0.00 N/A 1.274±0.00 N/A N/A N/A N/A N/A 0.477±0.00
ENSG00000220105 ENST00000402406 0.051±0.00 0.056±0.00 N/A 0.030±0.00 0.029±0.00 N/A N/A 0.028±0.00 N/A N/A 0.093±0.00 N/A 0.094±0.00 0.050±0.00
ENSG00000233186 ENST00000412782 N/A 0.429±0.00 0.065±0.00 0.082±0.00 N/A N/A N/A N/A 0.090±0.05 N/A 0.339±0.00 0.452±0.54 N/A N/A
ENSG00000270639 ENST00000604092 N/A N/A N/A N/A N/A N/A 0.025±0.00 0.041±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000276893 ENST00000620746 N/A 0.724±0.00 N/A N/A N/A N/A N/A N/A 0.328±0.00 1.028±0.00 N/A 29.695±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024782 ENSMUST00000025696 67.222±15.78 44.412±4.72 47.401±2.04 10.579±1.56 43.186±13.37 38.978±3.14 30.177±1.18 68.956±2.33 55.375±35.82 32.220±4.25 18.930±2.26 29.878±11.51 17.499±8.47 2.092±0.00
ENSMUST00000125587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024785 ENSMUST00000064393 15.099±2.80 36.807±1.39 10.179±0.66 6.122±0.76 13.116±5.22 6.684±1.41 2.244±0.48 7.703±0.58 28.281±6.40 7.514±0.73 2.997±0.79 15.652±5.09 18.997±9.80 2.031±0.67
ENSMUSG00000065556 ENSMUST00000083622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.103±0.00 N/A
ENSMUSG00000100075 ENSMUST00000187897 14.701±2.48 87.731±5.94 N/A N/A 17.341±7.51 41.990±5.70 4.863±0.17 17.160±7.29 31.834±3.88 15.753±5.38 N/A 32.415±10.08 N/A 66.355±3.48

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