C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120324 PCDHB10 9606 + 5:141187319-141195642 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000239446 PCDHB10-001 141192353-141195642 protein_coding
  ENST00000515856 PCDHB10-201 141187319-141194955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000239446ENST00000515856
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000239446 0.832±0.00 1.636±0.74 0.870±0.05 1.072±0.00 0.423±0.00 0.569±0.00 0.092±0.00 0.903±0.31 0.947±0.59 0.342±0.09 1.386±0.00
ENST00000515856 N/A N/A N/A 0.405±0.00 N/A 0.025±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000D CGP 5:141187127-141195642
CIL_00062S CIL_00062S_000A CGP 5:141187319-141203779

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000048347 Pcdhb18 protocadherin beta 18 protein_coding Mus_musculus

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