C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048347 Pcdhb18 10090 + 18:37489465-37494503 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055949 Pcdhb18-201 37489465-37494503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055949 0.573±0.47 1.605±0.23 0.655±0.03 1.048±0.25 0.246±0.04 0.338±0.16 0.424±0.10 0.279±0.10 0.029±0.01 0.851±0.04 0.086±0.03 0.826±0.56 0.020±0.01 0.052±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000Q CGP 18:37485021-37494503
CIL_00062S CIL_00062S_000U CGP 18:37489465-37504127

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000120324 PCDHB10 protocadherin beta 10 protein_coding Homo_sapiens
ENSG00000177839 PCDHB9 protocadherin beta 9 protein_coding Homo_sapiens

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