C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239446 PCDHB10-001 ENSG00000120324 9606 + 5:141192353-141195642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000239446
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000239446 0.832±0.00 1.636±0.74 0.870±0.05 1.072±0.00 0.423±0.00 0.569±0.00 0.092±0.00 0.903±0.31 0.947±0.59 0.342±0.09 1.386±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000D CGP 5:141187127-141195642
CIL_00062S CIL_00062S_000A CGP 5:141187319-141203779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055949 Pcdhb18-201 protein_coding Mus_musculus 0 1919
ENSMUST00000056915 Pcdhb13-201 protein_coding Mus_musculus 0 918
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 911
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 909
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 900
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 898
ENSMUST00000059571 Pcdhb19-201 protein_coding Mus_musculus 0 889
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 880
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 865
ENSMUST00000061717 Pcdhb6-201 protein_coding Mus_musculus 0 863
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 830
ENSMUST00000055495 Pcdhb12-201 protein_coding Mus_musculus 0 789
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 0 780

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