C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger and SCAN domain containing 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121413 ZSCAN18 9606 - 19:58083838-58118427 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000240727 ZSCAN18-003 58083839-58098210 protein_coding
  ENST00000421612 ZSCAN18-012 58084438-58098228 protein_coding
  ENST00000433686 ZSCAN18-017 58083838-58089961 protein_coding
  ENST00000594191 ZSCAN18-004 58087093-58098231 retained_intron
  ENST00000594567 ZSCAN18-016 58108802-58118366 processed_transcript
  ENST00000595721 ZSCAN18-015 58090176-58118397 protein_coding
  ENST00000595784 ZSCAN18-013 58086580-58087453 retained_intron
  ENST00000595944 ZSCAN18-008 58107616-58118427 protein_coding
  ENST00000596372 ZSCAN18-007 58083859-58088027 retained_intron
  ENST00000598497 ZSCAN18-005 58083843-58090598 retained_intron
  ENST00000600318 ZSCAN18-006 58087637-58098210 retained_intron
  ENST00000600404 ZSCAN18-001 58084482-58118426 protein_coding
  ENST00000600522 ZSCAN18-014 58086174-58087377 protein_coding
  ENST00000600845 ZSCAN18-011 58088688-58098203 protein_coding
  ENST00000600897 ZSCAN18-009 58088685-58098214 protein_coding
  ENST00000601063 ZSCAN18-010 58090233-58098228 protein_coding
  ENST00000601144 ZSCAN18-002 58084337-58098363 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240727ENST00000421612ENST00000433686ENST00000595784ENST00000596372ENST00000598497ENST00000600318ENST00000601144
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240727 2.576±0.00 N/A N/A 14.989±0.00 5.727±0.00 5.675±0.00 4.902±0.00 6.393±0.00 3.232±0.00 N/A 1.517±0.00 14.731±0.00 9.754±1.24 9.269±0.00
ENST00000421612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.732±0.00 N/A N/A N/A
ENST00000433686 6.228±0.00 15.192±0.00 N/A 22.435±16.83 12.384±0.00 7.590±6.97 5.548±4.22 15.472±0.00 1.714±0.00 12.847±0.00 5.147±0.00 26.091±25.91 12.978±0.54 18.633±3.92
ENST00000595784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.379±0.00 N/A N/A
ENST00000596372 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.954±0.00 N/A N/A N/A N/A
ENST00000598497 N/A 2.433±0.00 N/A N/A N/A N/A N/A 2.004±0.00 0.575±0.00 N/A N/A 4.192±0.00 N/A 3.271±0.00
ENST00000600318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.432±0.00 N/A N/A
ENST00000601144 4.883±0.00 N/A 0.890±0.00 N/A 6.498±4.18 7.295±0.00 3.410±1.80 2.051±0.00 N/A 8.564±0.00 N/A 0.967±0.00 6.937±0.00 12.456±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UJ CIL_0006UJ_0001 CGP 19:58083838-58155110

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA:IBA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000070822 Zscan18 zinc finger and SCAN domain containing 18 protein_coding Mus_musculus

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