C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger and SCAN domain containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240727 ZSCAN18-003 ENSG00000121413 9606 - 19:58083839-58098210 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000240727
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000240727 2.576±0.00 14.989±0.00 5.727±0.00 5.675±0.00 4.902±0.00 6.393±0.00 3.232±0.00 1.517±0.00 14.731±0.00 9.754±1.24 9.269±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UJ CIL_0006UJ_0001 CGP 19:58083838-58155110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA:IBA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117721 Zkscan3-004 protein_coding Mus_musculus 3e-22 111
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 3e-22 111
ENSMUST00000116433 Zkscan3-002 protein_coding Mus_musculus 3e-22 111
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 3e-22 111
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 1e-20 106
ENSMUST00000076238 Gm10065-201 protein_coding Mus_musculus 1e-20 106
ENSMUST00000094116 Zscan25-201 protein_coding Mus_musculus 3e-17 95
ENSMUST00000161896 Zkscan5-003 nonsense_mediated_decay Mus_musculus 1e-16 94
ENSMUST00000031601 Zkscan5-002 protein_coding Mus_musculus 1e-16 94
ENSMUST00000085671 Zkscan5-001 protein_coding Mus_musculus 1e-16 94
ENSMUST00000099720 Zscan12-002 protein_coding Mus_musculus 4e-16 92
ENSMUST00000053293 Zscan12-001 protein_coding Mus_musculus 4e-16 92
ENSMUST00000110481 Zkscan8-002 protein_coding Mus_musculus 0.00000000000006 84
ENSMUST00000156674 Zkscan8-003 protein_coding Mus_musculus 0.00000000000006 84
ENSMUST00000045228 Zkscan8-001 protein_coding Mus_musculus 0.00000000000006 84

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