C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger and SCAN domain containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000601144 ZSCAN18-002 ENSG00000121413 9606 - 19:58084337-58098363 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000601144
Transcript ID Adipose Bladder Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000601144 4.883±0.00 0.890±0.00 6.498±4.18 7.295±0.00 3.410±1.80 2.051±0.00 8.564±0.00 0.967±0.00 6.937±0.00 12.456±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UJ CIL_0006UJ_0001 CGP 19:58083838-58155110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA:IBA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117721 Zkscan3-004 protein_coding Mus_musculus 2e-22 111
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 2e-22 111
ENSMUST00000116433 Zkscan3-002 protein_coding Mus_musculus 2e-22 111
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 2e-22 111
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 1e-20 106
ENSMUST00000076238 Gm10065-201 protein_coding Mus_musculus 1e-20 106
ENSMUST00000094116 Zscan25-201 protein_coding Mus_musculus 2e-17 95
ENSMUST00000161896 Zkscan5-003 nonsense_mediated_decay Mus_musculus 8e-17 94
ENSMUST00000031601 Zkscan5-002 protein_coding Mus_musculus 8e-17 94
ENSMUST00000085671 Zkscan5-001 protein_coding Mus_musculus 8e-17 94
ENSMUST00000099720 Zscan12-002 protein_coding Mus_musculus 3e-16 92
ENSMUST00000053293 Zscan12-001 protein_coding Mus_musculus 3e-16 92
ENSMUST00000110481 Zkscan8-002 protein_coding Mus_musculus 0.00000000000005 84
ENSMUST00000156674 Zkscan8-003 protein_coding Mus_musculus 0.00000000000005 84
ENSMUST00000045228 Zkscan8-001 protein_coding Mus_musculus 0.00000000000005 84

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