C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KH domain containing, RNA binding, signal transduction associated 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121774 KHDRBS1 9606 + 1:32013829-32060850 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307714 KHDRBS1-002 32013926-32043877 processed_transcript
  ENST00000327300 KHDRBS1-001 32013829-32043882 protein_coding
  ENST00000484270 KHDRBS1-005 32014182-32060850 processed_transcript
  ENST00000492989 KHDRBS1-003 32013996-32042624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327300ENST00000484270ENST00000492989
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327300 38.746±0.00 54.035±0.00 4.210±0.00 23.961±16.53 21.503±10.30 24.167±13.01 11.233±8.15 20.961±12.81 11.380±1.47 18.871±7.73 15.324±11.79 41.237±18.21 45.612±8.23 40.807±11.16
ENST00000484270 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.316±0.00 N/A 15.585±0.00 N/A 24.468±0.00
ENST00000492989 N/A N/A 2.691±0.00 N/A N/A N/A N/A N/A 4.009±0.00 N/A N/A 5.504±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 ISS G2/M transition of mitotic cell cycle
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003723 IDA:IEA RNA binding
GO:0005070 IPI SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006397 TAS mRNA processing
GO:0007050 TAS cell cycle arrest
GO:0007165 TAS signal transduction
GO:0007166 IDA cell surface receptor signaling pathway
GO:0008143 IDA poly(A) binding
GO:0008266 IDA poly(U) RNA binding
GO:0008283 TAS cell proliferation
GO:0009967 IPI positive regulation of signal transduction
GO:0016020 IDA membrane
GO:0017124 IEA SH3 domain binding
GO:0032403 IEA protein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045948 IDA positive regulation of translational initiation
GO:0046831 ISS regulation of RNA export from nucleus
GO:0046833 IDA positive regulation of RNA export from nucleus
GO:0070618 IEA Grb2-Sos complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052856 khdrbs1a KH domain containing, RNA binding, signal transduction associated 1a protein_coding Danio_rerio
ENSDARG00000070475 khdrbs1b KH domain containing, RNA binding, signal transduction associated 1b protein_coding Danio_rerio
ENSMUSG00000028790 Khdrbs1 KH domain containing, RNA binding, signal transduction associated 1 protein_coding Mus_musculus

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