C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KH domain containing, RNA binding, signal transduction associated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327300 KHDRBS1-001 ENSG00000121774 9606 + 1:32013829-32043882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327300 38.746±0.00 54.035±0.00 4.210±0.00 23.961±16.53 21.503±10.30 24.167±13.01 11.233±8.15 20.961±12.81 11.380±1.47 18.871±7.73 15.324±11.79 41.237±18.21 45.612±8.23 40.807±11.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 ISS G2/M transition of mitotic cell cycle
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003723 IDA:IEA RNA binding
GO:0005070 IPI SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006397 TAS mRNA processing
GO:0007050 TAS cell cycle arrest
GO:0007165 TAS signal transduction
GO:0007166 IDA cell surface receptor signaling pathway
GO:0008143 IDA poly(A) binding
GO:0008266 IDA poly(U) RNA binding
GO:0008283 TAS cell proliferation
GO:0009967 IPI positive regulation of signal transduction
GO:0016020 IDA membrane
GO:0017124 IEA SH3 domain binding
GO:0032403 IEA protein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045948 IDA positive regulation of translational initiation
GO:0046831 ISS regulation of RNA export from nucleus
GO:0046833 IDA positive regulation of RNA export from nucleus
GO:0070618 IEA Grb2-Sos complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066257 Khdrbs1-002 protein_coding Mus_musculus 0 3461
ENSMUST00000129342 Khdrbs1-001 nonsense_mediated_decay Mus_musculus 0 2060
ENSMUST00000139281 Khdrbs1-004 retained_intron Mus_musculus 0 773

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