C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KH domain containing, RNA binding, signal transduction associated 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028790 Khdrbs1 10090 - 4:129703164-129742303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066257 Khdrbs1-002 129713819-129742296 protein_coding
  ENSMUST00000129342 Khdrbs1-001 129703164-129742297 nonsense_mediated_decay
  ENSMUST00000139281 Khdrbs1-004 129728935-129742303 retained_intron
  ENSMUST00000139936 Khdrbs1-003 129703826-129713820 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066257ENSMUST00000129342ENSMUST00000139281
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066257 6.192±3.15 14.040±4.65 9.977±2.17 17.327±8.64 7.456±4.79 8.663±2.98 3.459±0.86 5.361±1.67 6.860±4.84 11.665±1.16 5.521±0.32 13.126±7.01 15.918±7.18 3.613±1.26
ENSMUST00000129342 5.245±2.64 N/A 2.793±0.19 13.798±6.72 4.475±1.17 5.658±2.02 1.931±0.25 3.028±0.46 2.002±1.40 6.771±1.34 1.234±0.10 11.752±7.88 17.557±15.59 6.846±2.38
ENSMUST00000139281 N/A 45.778±12.75 N/A N/A 25.124±11.41 9.830±2.23 N/A 3.071±0.00 1.608±0.55 16.037±3.16 N/A 31.956±11.91 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005070 IPI SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0007166 IDA cell surface receptor signaling pathway
GO:0008143 ISO poly(A) binding
GO:0008266 ISO poly(U) RNA binding
GO:0009967 IPI positive regulation of signal transduction
GO:0016020 ISS membrane
GO:0017124 IEA SH3 domain binding
GO:0032403 IEA protein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045948 ISS positive regulation of translational initiation
GO:0046831 IDA regulation of RNA export from nucleus
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0070618 IEA Grb2-Sos complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052856 khdrbs1a KH domain containing, RNA binding, signal transduction associated 1a protein_coding Danio_rerio
ENSDARG00000070475 khdrbs1b KH domain containing, RNA binding, signal transduction associated 1b protein_coding Danio_rerio
ENSG00000121774 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 protein_coding Homo_sapiens

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