C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PQ loop repeat containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122490 PQLC1 9606 - 18:79902420-79951664 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351365 PQLC1-003 79902421-79950817 nonsense_mediated_decay
  ENST00000357575 PQLC1-009 79902420-79951638 protein_coding
  ENST00000397778 PQLC1-001 79902420-79951664 protein_coding
  ENST00000466449 PQLC1-002 79902466-79944324 retained_intron
  ENST00000469369 PQLC1-007 79904052-79941750 processed_transcript
  ENST00000474967 PQLC1-004 79902515-79951657 nonsense_mediated_decay
  ENST00000478144 PQLC1-006 79919344-79950866 protein_coding
  ENST00000494607 PQLC1-005 79919228-79945232 processed_transcript
  ENST00000589000 PQLC1-013 79904141-79935479 processed_transcript
  ENST00000589452 PQLC1-010 79933969-79951657 nonsense_mediated_decay
  ENST00000590381 PQLC1-008 79903446-79951653 protein_coding
  ENST00000590895 PQLC1-014 79903894-79915961 processed_transcript
  ENST00000591964 PQLC1-011 79919232-79951629 nonsense_mediated_decay
  ENST00000593030 PQLC1-012 79924887-79951603 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351365ENST00000357575ENST00000397778ENST00000466449ENST00000474967ENST00000478144ENST00000590895ENST00000593030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351365 N/A N/A N/A N/A N/A N/A N/A 1.111±0.00 N/A N/A N/A N/A N/A N/A
ENST00000357575 10.791±0.00 5.149±0.00 N/A 1.297±0.00 4.590±4.02 10.987±0.00 4.760±0.00 8.306±6.09 22.902±0.00 6.591±6.34 2.497±0.00 7.531±0.95 5.811±2.28 11.502±0.99
ENST00000397778 17.620±0.00 8.457±0.00 N/A 5.778±3.77 13.554±0.00 3.273±0.00 3.466±0.00 6.437±0.00 11.756±10.83 12.604±0.00 5.224±2.27 6.310±3.86 7.218±2.45 7.296±0.00
ENST00000466449 N/A N/A N/A N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474967 10.105±0.00 3.471±0.00 0.366±0.00 3.774±2.50 4.338±0.00 1.634±0.94 N/A N/A N/A 0.143±0.00 N/A 2.706±0.95 2.079±0.25 8.742±2.25
ENST00000478144 N/A N/A N/A N/A N/A N/A N/A N/A 1.286±0.00 N/A N/A N/A N/A N/A
ENST00000590895 N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593030 N/A N/A N/A N/A 0.366±0.00 N/A N/A N/A 1.365±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0001 VISTA 18:79552100-80156263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088768 PQLC1 PQ loop repeat containing 1 protein_coding Danio_rerio
ENSMUSG00000034006 Pqlc1 PQ loop repeat containing 1 protein_coding Mus_musculus

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