C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PQ loop repeat containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034006 Pqlc1 10090 + 18:80253292-80292725 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070135 Pqlc1-003 80256318-80292712 protein_coding
  ENSMUST00000091798 Pqlc1-201 80256306-80292724 protein_coding
  ENSMUST00000123750 Pqlc1-001 80255245-80292725 protein_coding
  ENSMUST00000129043 Pqlc1-002 80256284-80292716 protein_coding
  ENSMUST00000131780 Pqlc1-004 80253292-80292637 protein_coding
  ENSMUST00000134545 Pqlc1-007 80256307-80273326 retained_intron
  ENSMUST00000140594 Pqlc1-005 80256307-80292714 protein_coding
  ENSMUST00000144468 Pqlc1-008 80255836-80284071 protein_coding
  ENSMUST00000151677 Pqlc1-006 80256288-80275146 retained_intron
  ENSMUST00000155039 Pqlc1-010 80262840-80263485 processed_transcript
  ENSMUST00000157056 Pqlc1-009 80253342-80283385 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070135ENSMUST00000091798ENSMUST00000123750ENSMUST00000129043ENSMUST00000131780ENSMUST00000134545ENSMUST00000140594ENSMUST00000144468ENSMUST00000157056
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070135 10.362±4.05 10.509±5.36 6.158±0.73 3.906±1.74 14.176±4.73 19.020±3.39 25.868±4.62 41.351±20.43 21.843±7.05 1.581±0.65 21.535±5.66 1.771±0.17 10.189±5.42
ENSMUST00000091798 N/A 2.915±0.00 N/A 1.140±0.00 3.137±0.00 N/A N/A N/A 8.178±0.29 1.695±0.77 6.601±3.31 0.709±0.00 13.481±7.60
ENSMUST00000123750 2.878±0.58 5.067±0.54 2.980±0.42 N/A 4.469±0.40 14.100±3.99 N/A 14.069±6.01 7.465±0.24 N/A 6.346±1.95 1.204±0.07 N/A
ENSMUST00000129043 5.678±0.54 7.884±1.91 8.114±0.18 8.604±3.91 6.290±0.46 10.402±3.62 12.906±2.77 10.160±4.07 11.096±1.85 4.669±1.33 16.673±9.60 2.374±0.44 10.097±2.46
ENSMUST00000131780 N/A 3.614±0.00 N/A N/A 1.937±0.00 N/A 7.714±1.43 N/A N/A 0.866±0.00 7.433±2.42 N/A N/A
ENSMUST00000134545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.443±0.00
ENSMUST00000140594 2.712±0.64 3.379±0.90 2.210±0.23 2.406±0.24 3.170±0.15 4.225±0.04 5.398±0.33 7.723±2.91 6.283±1.43 0.904±0.00 5.677±0.98 1.016±0.00 4.076±0.00
ENSMUST00000144468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.085±1.71
ENSMUST00000157056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.778±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0002 VISTA 18:80030119-80632361
CIL_0001P3 CIL_0001P3_0002 CGP 18:80253292-80364254

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088768 PQLC1 PQ loop repeat containing 1 protein_coding Danio_rerio
ENSG00000122490 PQLC1 PQ loop repeat containing 1 protein_coding Homo_sapiens

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