C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prefoldin subunit 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123349 PFDN5 9606 + 12:53295291-53299450 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243040 PFDN5-003 53295542-53299450 nonsense_mediated_decay
  ENST00000334478 PFDN5-005 53295552-53299450 protein_coding
  ENST00000351500 PFDN5-004 53295525-53299450 protein_coding
  ENST00000547130 PFDN5-009 53295542-53299450 nonsense_mediated_decay
  ENST00000547228 PFDN5-007 53295576-53297404 retained_intron
  ENST00000548984 PFDN5-010 53297788-53299446 retained_intron
  ENST00000549759 PFDN5-013 53295582-53299447 protein_coding
  ENST00000549995 PFDN5-016 53295548-53297765 retained_intron
  ENST00000550069 PFDN5-008 53295527-53296324 retained_intron
  ENST00000550513 PFDN5-021 53295559-53297924 retained_intron
  ENST00000550846 PFDN5-019 53295536-53299450 protein_coding
  ENST00000550880 PFDN5-006 53295525-53299445 nonsense_mediated_decay
  ENST00000550964 PFDN5-018 53297613-53299446 retained_intron
  ENST00000551018 PFDN5-001 53295291-53299450 protein_coding
  ENST00000551223 PFDN5-014 53295542-53296706 retained_intron
  ENST00000552341 PFDN5-002 53295542-53299446 retained_intron
  ENST00000552548 PFDN5-020 53296035-53299343 retained_intron
  ENST00000552742 PFDN5-015 53295556-53299450 nonsense_mediated_decay
  ENST00000553171 PFDN5-017 53297885-53298488 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334478ENST00000351500ENST00000550846
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334478 194.346±0.00 255.961±0.00 19.982±0.00 100.933±45.48 125.511±82.35 237.696±196.38 78.005±58.89 135.434±86.77 93.436±34.67 288.317±239.62 89.938±44.00 409.538±214.41 561.390±129.93 340.515±92.10
ENST00000351500 50.075±0.00 148.659±0.00 N/A 28.881±13.28 73.604±0.00 N/A N/A 73.161±0.00 N/A N/A N/A N/A N/A 79.662±0.00
ENST00000550846 N/A 126.475±0.00 N/A 70.609±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 79.494±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IH CIL_0001IH_0001 CGP 12:53268299-53299450
CIL_00060P CIL_00060P_0001 CGP 12:53295291-53307177

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006457 TAS protein folding
GO:0016272 IEA prefoldin complex
GO:0044267 TAS cellular protein metabolic process
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0060041 IEA retina development in camera-type eye
GO:0090090 IMP negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035043 pfdn5 prefoldin 5 protein_coding Danio_rerio
ENSMUSG00000001289 Pfdn5 prefoldin 5 protein_coding Mus_musculus

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