C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prefoldin subunit 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334478 PFDN5-005 ENSG00000123349 9606 + 12:53295552-53299450 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334478 194.346±0.00 255.961±0.00 19.982±0.00 100.933±45.48 125.511±82.35 237.696±196.38 78.005±58.89 135.434±86.77 93.436±34.67 288.317±239.62 89.938±44.00 409.538±214.41 561.390±129.93 340.515±92.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IH CIL_0001IH_0001 CGP 12:53268299-53299450
CIL_00060P CIL_00060P_0001 CGP 12:53295291-53307177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006457 TAS:IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0044267 TAS cellular protein metabolic process
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0090090 IMP negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166658 Pfdn5-001 protein_coding Mus_musculus 0 664
ENSMUST00000122039 Gm5644-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000165717 Pfdn5-008 protein_coding Mus_musculus 0 481
ENSMUST00000165671 Pfdn5-007 protein_coding Mus_musculus 0 368
ENSMUST00000168805 Pfdn5-005 retained_intron Mus_musculus 0 368
ENSMUST00000062492 Pfdn5-006 protein_coding Mus_musculus 0 368
ENSMUST00000001335 Pfdn5-003 nonsense_mediated_decay Mus_musculus 0 318
ENSMUST00000170627 Pfdn5-002 protein_coding Mus_musculus 0 305
ENSMUST00000169637 Pfdn5-004 protein_coding Mus_musculus 3.00004e-41 172

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