C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB38, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123892 RAB38 9606 - 11:88113242-88175467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243662 RAB38-001 88113242-88175467 protein_coding
  ENST00000526372 RAB38-002 88113612-88175434 protein_coding
  ENST00000531138 RAB38-003 88113464-88175433 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000243662ENST00000526372ENST00000531138
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000243662 0.165±0.00 0.163±0.00 0.227±0.00 0.096±0.00 0.577±0.28 1.103±0.03 0.182±0.00 0.811±0.00 0.477±0.40 1.498±0.40 1.554±0.59 6.050±1.89 1.351±0.48
ENST00000526372 N/A N/A 0.147±0.00 0.158±0.00 1.148±0.00 N/A 0.027±0.00 0.650±0.00 0.515±0.00 0.583±0.00 N/A N/A N/A
ENST00000531138 0.348±0.00 0.092±0.00 N/A 0.093±0.00 0.209±0.00 N/A N/A 0.320±0.00 0.228±0.00 N/A N/A N/A 0.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JD CIL_0001JD_0002 CGP 11:88113242-88337787

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 NAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 NAS:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005769 IDA early endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006184 NAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0006996 IEA organelle organization
GO:0007165 IEA signal transduction
GO:0007264 NAS:IEA small GTPase mediated signal transduction
GO:0015031 NAS:IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0030742 IPI GTP-dependent protein binding
GO:0031982 IEA vesicle
GO:0032403 IPI protein complex binding
GO:0032438 IMP melanosome organization
GO:0035646 IMP endosome to melanosome transport
GO:0035650 IPI AP-1 adaptor complex binding
GO:0035651 IPI AP-3 adaptor complex binding
GO:0042470 IDA melanosome
GO:0045335 IDA phagocytic vesicle
GO:0060155 IEA platelet dense granule organization
GO:0072657 IMP protein localization to membrane
GO:0090383 IMP phagosome acidification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028776 rab38a RAB38a, member RAS oncogene family protein_coding Danio_rerio
ENSDARG00000069159 rab38b RAB38b, member of RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000030559 Rab38 RAB38, member RAS oncogene family protein_coding Mus_musculus

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