C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB38, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243662 RAB38-001 ENSG00000123892 9606 - 11:88113242-88175467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000243662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000243662 0.165±0.00 0.163±0.00 0.227±0.00 0.096±0.00 0.577±0.28 1.103±0.03 0.182±0.00 0.811±0.00 0.477±0.40 1.498±0.40 1.554±0.59 6.050±1.89 1.351±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JD CIL_0001JD_0002 CGP 11:88113242-88337787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 NAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 NAS:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005769 IDA early endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006184 NAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0006996 IEA organelle organization
GO:0007165 IEA signal transduction
GO:0007264 NAS:IEA small GTPase mediated signal transduction
GO:0015031 NAS:IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0030742 IPI GTP-dependent protein binding
GO:0031982 IEA vesicle
GO:0032403 IPI protein complex binding
GO:0032438 IMP melanosome organization
GO:0035646 IMP endosome to melanosome transport
GO:0035650 IPI AP-1 adaptor complex binding
GO:0035651 IPI AP-3 adaptor complex binding
GO:0042470 IDA melanosome
GO:0045335 IDA phagocytic vesicle
GO:0060155 IEA platelet dense granule organization
GO:0072657 IMP protein localization to membrane
GO:0090383 IMP phagosome acidification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107256 Rab38-001 protein_coding Mus_musculus 0 970
ENSDART00000040125 rab38a-201 protein_coding Danio_rerio 0 340

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