C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin family member 21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124104 SNX21 9606 + 20:45833810-45843275 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342644 SNX21-011 45833852-45842881 protein_coding
  ENST00000344780 SNX21-004 45834151-45843275 processed_transcript
  ENST00000372541 SNX21-006 45834136-45840907 protein_coding
  ENST00000372542 SNX21-003 45833895-45841730 protein_coding
  ENST00000372547 SNX21-001 45834577-45842881 retained_intron
  ENST00000462307 SNX21-005 45833831-45841134 protein_coding
  ENST00000465997 SNX21-002 45835033-45841090 processed_transcript
  ENST00000466252 SNX21-007 45833810-45835055 processed_transcript
  ENST00000472219 SNX21-012 45833831-45841730 processed_transcript
  ENST00000478230 SNX21-008 45834357-45841171 processed_transcript
  ENST00000486336 SNX21-009 45834749-45840971 retained_intron
  ENST00000491381 SNX21-010 45833852-45841730 protein_coding
  ENST00000614929 SNX21-201 45833831-45838318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372541ENST00000372542ENST00000372547ENST00000491381
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372541 N/A N/A N/A N/A N/A N/A 2.049±0.00 N/A 2.039±0.00 N/A N/A N/A N/A
ENST00000372542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.459±0.00 N/A N/A
ENST00000372547 N/A N/A N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A N/A
ENST00000491381 16.122±0.00 8.711±0.00 5.620±3.23 15.792±13.94 8.583±0.00 3.703±2.44 12.446±0.00 2.211±0.33 5.703±4.35 27.223±0.00 15.843±13.07 11.682±1.29 8.971±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IO CIL_0000IO_0001 CGP 20:45823214-45843275
CIL_00002M CIL_00002M_0001 CGP 20:45833810-45857406

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062770 snx21 sorting nexin family member 21 protein_coding Danio_rerio
ENSMUSG00000050373 Snx21 sorting nexin family member 21 protein_coding Mus_musculus

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