C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin family member 21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050373 Snx21 10090 + 2:164785823-164793816 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056181 Snx21-001 164785991-164793810 protein_coding
  ENSMUST00000140519 Snx21-003 164786794-164792624 protein_coding
  ENSMUST00000152471 Snx21-002 164786017-164787632 protein_coding
  ENSMUST00000172577 Snx21-005 164785991-164793052 protein_coding
  ENSMUST00000173945 Snx21-006 164790411-164793816 retained_intron
  ENSMUST00000174070 Snx21-004 164785823-164792487 protein_coding
  ENSMUST00000174342 Snx21-007 164791652-164793808 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056181ENSMUST00000172577ENSMUST00000173945ENSMUST00000174070ENSMUST00000174342
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056181 5.633±0.71 9.722±1.03 4.646±0.41 3.488±0.65 6.493±0.49 5.975±0.10 3.507±0.91 4.839±0.50 2.658±0.40 7.418±1.15 2.598±0.78 5.103±0.96 3.551±1.16 2.854±0.35
ENSMUST00000172577 10.151±1.96 24.213±1.81 5.916±0.66 N/A 11.379±3.02 11.154±3.25 6.858±1.54 7.166±0.85 5.014±0.89 11.074±0.35 6.870±0.85 10.386±2.76 8.527±3.85 3.962±0.20
ENSMUST00000173945 N/A N/A 2.247±0.00 N/A 3.502±0.00 N/A N/A N/A N/A N/A 0.768±0.00 2.761±0.66 2.994±0.00 N/A
ENSMUST00000174070 6.400±1.11 13.261±3.92 N/A 8.849±1.34 6.356±0.54 11.046±2.44 N/A 5.360±0.00 N/A 8.731±1.88 5.789±0.58 11.687±1.68 8.627±0.29 N/A
ENSMUST00000174342 N/A N/A N/A 3.823±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.958±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IO CIL_0000IO_0002 CGP 2:164777161-164793816
CIL_00002M CIL_00002M_0002 CGP 2:164785823-164804882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062770 snx21 sorting nexin family member 21 protein_coding Danio_rerio
ENSG00000124104 SNX21 sorting nexin family member 21 protein_coding Homo_sapiens

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