C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin family member 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491381 SNX21-010 ENSG00000124104 9606 + 20:45833852-45841730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000491381
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000491381 16.122±0.00 8.711±0.00 5.620±3.23 15.792±13.94 8.583±0.00 3.703±2.44 12.446±0.00 2.211±0.33 5.703±4.35 27.223±0.00 15.843±13.07 11.682±1.29 8.971±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IO CIL_0000IO_0001 CGP 20:45823214-45843275
CIL_00002M CIL_00002M_0001 CGP 20:45833810-45857406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056181 Snx21-001 protein_coding Mus_musculus 0 1306
ENSMUST00000172577 Snx21-005 protein_coding Mus_musculus 0 1262
ENSMUST00000174070 Snx21-004 protein_coding Mus_musculus 0 1256
ENSMUST00000174342 Snx21-007 processed_transcript Mus_musculus 0 861
ENSMUST00000173945 Snx21-006 retained_intron Mus_musculus 0 861

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